View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_9 (Length: 527)
Name: NF2926_low_9
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 38892111 - 38891713
Alignment:
| Q |
18 |
cttagtacatggacattgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagtt |
117 |
Q |
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| T |
38892111 |
cttagtacatggacattgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcaccataagtt |
38892012 |
T |
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| Q |
118 |
ttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagttttttgaatgatgatt |
217 |
Q |
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| T |
38892011 |
ttcaaactaattttcgacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagttttttgaatgatgatt |
38891912 |
T |
|
| Q |
218 |
gccggtgacggcaatgacagtatatgtaccattttcaatggagatgaagattgttggtattagttgaaaaatatatgttgaagaagtctcacattac--- |
314 |
Q |
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| T |
38891911 |
gccggtgacggcaatgacaatatatgtaccattttcaatggagatgaagattgttggtgttagttgaaaaatatatgttgaagaagtctcacattaccta |
38891812 |
T |
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| Q |
315 |
gtattataaaggaaaaggaaggttgggac--tatatatatggactataattttttgttatatgacacactagccaaaaacacattaaacttctatggaa |
411 |
Q |
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| T |
38891811 |
gtattataaaggaaaagggaggttgggactatatatatatggactataattttttgttatatgacacactagccaaaaacacattaaacttgtatggaa |
38891713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 448 - 505
Target Start/End: Complemental strand, 38891676 - 38891619
Alignment:
| Q |
448 |
agtattgtgagatgtagagtgtgggtgtaaatggggtcgttgggtgtttaagagtagt |
505 |
Q |
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| T |
38891676 |
agtattgtgagatgtagagtgtgggtgtaaatggggtcgtggggtgtttaagagtagt |
38891619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 34981268 - 34981081
Alignment:
| Q |
32 |
attgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagttttcaaactaatttt |
131 |
Q |
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| T |
34981268 |
attgattgacattgatgcaaagtgtgtttgagattatgtcagtggttgaagagttttcaaccaatatggaagttgcacgataagtttttagcatgatttt |
34981169 |
T |
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| Q |
132 |
caacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagtt-ttttgaatgatgattg |
218 |
Q |
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| T |
34981168 |
tgacatgtgaaaattattggagtggtttaaattcgagtgaagtatattttttatgatggagtatgatagttcttttgaactatgattg |
34981081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 16388148 - 16388197
Alignment:
| Q |
149 |
tggagtggtttaacttcaagtaaaatatactctttatggtggattatgata |
199 |
Q |
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| T |
16388148 |
tggagtggtttaacttcaagtgat-tatactctttatggtggagtatgata |
16388197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 2615244 - 2615158
Alignment:
| Q |
93 |
caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatact |
179 |
Q |
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| T |
2615244 |
caacatgaaagttgcattataagttttcagccggattttcaacatgtaaaaattcttggagtgttttaacttcaagtaaagtatact |
2615158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 29392515 - 29392552
Alignment:
| Q |
155 |
ggtttaacttcaagtaaaatatactctttatggtggat |
192 |
Q |
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| T |
29392515 |
ggtttaacttcaagtaaagtataccctttatggtggat |
29392552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 22189825 - 22189749
Alignment:
| Q |
92 |
tcaacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaag |
168 |
Q |
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| T |
22189825 |
tcaacatggaagttgctccttaagttttcaacctcattttcgatatgtgaaaattcttgaagtggtttaactacaag |
22189749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 21932311 - 21932222
Alignment:
| Q |
93 |
caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctt |
182 |
Q |
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||||||||||| |||| |||||||||||| | | |||| |||||||||||||| || | | ||| |||||||||| || ||||||||| |
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| T |
21932311 |
caacatggaagttgcacaataagttttcaacttgaatttcgacatgtgaaagttcttgaaatagttcaacttcaagtgaagtatactctt |
21932222 |
T |
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