View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_96 (Length: 227)
Name: NF2926_low_96
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_96 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 34128052 - 34127831
Alignment:
| Q |
6 |
agtatgaccaagttcataacaacatcttggaacatcatccctttcaacatcactcatcttataaattcaactataacatgttaagcttccttaattgtgt |
105 |
Q |
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| T |
34128052 |
agtatgaccaagttcataacaacatcttggaacatcatccctttcaacatcactcatcttataaattcaactataacatgttaagcttccttaattgtgt |
34127953 |
T |
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| Q |
106 |
ttacgtaatcatcttattaattcaacatttgttttatattgttttatatgcaatgtttttattttggtgatttcatcttagaaattctaatgctacatat |
205 |
Q |
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| T |
34127952 |
ttacgtaatcatcttattaattcaacatttgttttatattgttttatatgcaatgtttttattttggtgatttcattttagaaattctaatgctacatat |
34127853 |
T |
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| Q |
206 |
atctcaatttctgtttgttttt |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
34127852 |
atctcaatttctgtttgttttt |
34127831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 13704472 - 13704299
Alignment:
| Q |
14 |
caagttcataacaacatcttggaacatcatccctttcaacatcac---tcatcttataaattcaactataacatgttaagcttccttaattgtgtttacg |
110 |
Q |
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| T |
13704472 |
caagttcataacaatatcttggaacacctcccatttcatcatcatcatttatgttataaattcaaaattaacatgttaaccttctttaattgtgtttatc |
13704373 |
T |
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| Q |
111 |
taatcatcttattaattcaacattt---gttttatattgttttatatgcaatgtttttattttggtgatttcat |
181 |
Q |
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| T |
13704372 |
tactcttcttatagattcaacatttatcgttttatattggtttacatgcaatgtttatatctaggtcatttcat |
13704299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 27948378 - 27948193
Alignment:
| Q |
14 |
caagttcataacaacatcttggaacatcatccctttcaacatcactcatcttataaattcaactataacatgttaagcttccttaattgtgtttacgtaa |
113 |
Q |
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||||||| |||||||||||| || | ||||||||| ||||| |||| ||||||||||||| ||||||||||| ||| ||||||||||| || || |
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| T |
27948378 |
caagttcgtaacaacatcttaaaagacattccctttcatcatcattcatgttataaattcaacattaacatgttaacctttcttaattgtgtatatctac |
27948279 |
T |
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| Q |
114 |
tcatcttattaattcaacattt---gttttatattgttttatatgcaatgtttttattttggtgatttcatcttagaaattctaat |
196 |
Q |
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| T |
27948278 |
tcatcttataaaatcaatatttatcgttttatatttttttacatgcaatgtttgtgtctaggtcttttcatcttaaaaattctaat |
27948193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 7084997 - 7085058
Alignment:
| Q |
9 |
atgaccaagttcataacaacatcttggaacatcatccctttcaacatcactcatcttataaa |
70 |
Q |
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|||| |||||||| ||||| |||| ||||||| ||||||||| |||||||||||||||||| |
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| T |
7084997 |
atgatcaagttcaaaacaaactcttagaacatcttccctttcatcatcactcatcttataaa |
7085058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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