View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2926_low_99 (Length: 216)
Name: NF2926_low_99
Description: NF2926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2926_low_99 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41520128 - 41519913
Alignment:
| Q |
1 |
tgtctattattgggataatgtgggcttttgctattaagggaagcaacacaaagtgtggaacattaaggtttgcttgcaaaacgatgatggaaaattaagg |
100 |
Q |
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| T |
41520128 |
tgtctattatggggataatgtgggcttttgctattaagggaagcaacacaaagtgtggaacattaaggtttgcttgcaaaacgatgatggaaaattaagg |
41520029 |
T |
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| Q |
101 |
agcagtgtatgtatttttgggtgttagagtagaattgaagtgtgtttcaactgtatactatcactttgttttatgaagatgatactccctcctcaccaca |
200 |
Q |
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| T |
41520028 |
agcagtgtatgtatttttgggtgttagagtagaattgaagtgtgtttcaactgtatactatcactttgttttatgaagatgatactccctcctcaccaca |
41519929 |
T |
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| Q |
201 |
atatatcacattggcc |
216 |
Q |
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|||||||||||||||| |
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| T |
41519928 |
atatatcacattggcc |
41519913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 41510432 - 41510226
Alignment:
| Q |
1 |
tgtctattattgggataatgtgggcttttgctattaagggaagcaacacaaagtgtggaacattaaggtttgcttgcaaaacgatgat-ggaaaattaag |
99 |
Q |
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||||||| ||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||| | |||||||||| |
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| T |
41510432 |
tgtctatcattgggataatgtggccttgtgctattaaaggaaataacacaaagtgtggaacattaatgtttgcttgcaaaaccatggttggaaaattaat |
41510333 |
T |
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| Q |
100 |
gagcagtgtatgtatttttgggtgttagagtagaattgaagtgtgtttcaactgtatactatcactttgttttatgaagatgatactccctcctcaccac |
199 |
Q |
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||| |||||||||| |||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||| || | | |
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| T |
41510332 |
gagtagtgtatgtacttttgggtgttagagttgaattgaagcgtgtttcaattgtataatatcactttgttttatgaagatgatacttcctccacaactc |
41510233 |
T |
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| Q |
200 |
aatatat |
206 |
Q |
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| T |
41510232 |
aatatat |
41510226 |
T |
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