View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2927_high_3 (Length: 359)
Name: NF2927_high_3
Description: NF2927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2927_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 3706062 - 3706389
Alignment:
| Q |
16 |
aaacaaagctacattcctttgtagcaaattcaatctggactcgccattaatctggcgagccccagcagtgacgatgcagaggtcagaccccatcgtcact |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
3706062 |
aaacaaagctacattcctttgtagcaaattcaatctggactcgccattaatctgacgagccccagcagtgacgatgcagaggtcggaacccatcgtcact |
3706161 |
T |
|
| Q |
116 |
gaatagtcagtggaggcctggatcttagtacgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3706162 |
gaatagtcagtggaggcctggatcttagtgcgggggaggaaggccgcagcatgttgtagatccagcatctcacctcgtagtttgtcaggaatggcgtcaa |
3706261 |
T |
|
| Q |
216 |
caagaacaagctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3706262 |
caagaacaagctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgttt |
3706361 |
T |
|
| Q |
316 |
ggttggagaaggaggtgaggcatgttgg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3706362 |
ggttggagaaggaggtgaggcatgttgg |
3706389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 309
Target Start/End: Complemental strand, 41765310 - 41765147
Alignment:
| Q |
146 |
cgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtcttgtg |
245 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||| ||||| || || || |||||||| || || |||| || | || |||||||| |||||||| | |
|
|
| T |
41765310 |
cgggggaggaaagcagcagcgtgttgaagatcaagcatttcgccgcggagtttgtcgggtttgttgtcgacgatgacgagctcgtctgtgaggtcttgag |
41765211 |
T |
|
| Q |
246 |
ttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtg |
309 |
Q |
| |
|
|||||||||| ||||| || ||||| || |||||||| |||||||| || |||||||||||||| |
|
|
| T |
41765210 |
ttaggatggtctgagcaatggccatgccgacgttgccggcgccgatgacggagatcttgttgtg |
41765147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University