View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2927_high_8 (Length: 252)
Name: NF2927_high_8
Description: NF2927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2927_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 37920893 - 37921127
Alignment:
| Q |
1 |
ttgtgccaacattattcttccggtgtttggtaaccgttgagataaaaaatccccaaaccatcctccaaatagaccaccaaatgaattagaaattataaat |
100 |
Q |
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| T |
37920893 |
ttgtgccaacattattcttccggtgtttggtaaccgttgagataaaaaatccccaaaccatcctccaaatagaccaccaaatgaattagaaattataaat |
37920992 |
T |
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| Q |
101 |
actgtccaaataattgctgttgtaccatgtgagaagcctattagttctaaccaaagagtgaaaaatgataaacttgaccctcgaaacgatccaaatactc |
200 |
Q |
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| T |
37920993 |
actgtccaaataattgctgttgtaccatgtgagaagcctattagttctaaccaaagagtgaaaaatgataaacttgaccctcgaaacgatccaaatactc |
37921092 |
T |
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| Q |
201 |
cctgagctacaattatctgaaatgatggaactttt |
235 |
Q |
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| T |
37921093 |
cctgagctacaattatctgaaatgatggaactttt |
37921127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 37924742 - 37924970
Alignment:
| Q |
7 |
caacattattcttccggtgtttggtaaccgttgagataaaaaatccccaaaccatcctccaaatagaccaccaaatgaattagaaattataaatactgtc |
106 |
Q |
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| T |
37924742 |
caacattattctcccagtgtttggtaaccgtagggataaataatctccgaaccatcctccaaacagagacccaaatgaagcagaaactataaagaaggtc |
37924841 |
T |
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| Q |
107 |
caaataattgctgttgtaccatgtgagaagcctattagttctaaccaaagagtgaaaaatgataaacttgaccctcgaaacgatccaaatactccctgag |
206 |
Q |
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| T |
37924842 |
cagagaattgctgttgtaccatgtgagaagcctattagttctaaccaaagagtggcaaatgacaaacctgaccatgggaatgatccaaaaactccctgag |
37924941 |
T |
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| Q |
207 |
ctacaattatctgaaatgatggaactttt |
235 |
Q |
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| T |
37924942 |
ctactattatctgaaacgatggaattttt |
37924970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 37935897 - 37936056
Alignment:
| Q |
1 |
ttgtgccaacattattcttccggtgtttggtaaccgttgagataaaaaatccccaaaccatcctccaaatagaccaccaaatgaattagaaattataaat |
100 |
Q |
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||||| ||||||||||||||||| |||||||||| ||| ||||| | |||||| | |||||||||||| ||||| ||||||||| || || ||||||| |
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| T |
37935897 |
ttgtgacaacattattcttccggaatttggtaacctttgggataacatatcccccatccatcctccaaacagacccccaaatgaaacagcaactataaat |
37935996 |
T |
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| Q |
101 |
actgtccaaataattgctgttgtaccatgtgagaagcctattagttctaaccaaagagtg |
160 |
Q |
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| T |
37935997 |
agggaccaaagcaatgctgttgtcatgtgggagaagcctattaattctagccaaagagtg |
37936056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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