View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2927_low_1 (Length: 1104)

Name: NF2927_low_1
Description: NF2927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2927_low_1
NF2927_low_1
[»] chr4 (15 HSPs)
chr4 (720-1089)||(46245627-46245996)
chr4 (226-622)||(46246108-46246504)
chr4 (720-1093)||(46021607-46021969)
chr4 (17-258)||(46013892-46014137)
chr4 (226-509)||(46020429-46020712)
chr4 (17-179)||(46246534-46246696)
chr4 (472-651)||(46021346-46021538)
chr4 (17-177)||(46020243-46020403)
chr4 (378-507)||(46015349-46015478)
chr4 (943-1008)||(46428730-46428793)
chr4 (391-448)||(46020801-46020858)
chr4 (944-1064)||(46303465-46303583)
chr4 (558-591)||(46246080-46246113)
chr4 (380-449)||(46303835-46303904)
chr4 (206-239)||(46246503-46246536)
[»] chr1 (5 HSPs)
chr1 (468-509)||(3802617-3802658)
chr1 (385-449)||(3801753-3801817)
chr1 (380-438)||(3804121-3804179)
chr1 (468-505)||(50668118-50668155)
chr1 (468-509)||(50668580-50668621)
[»] chr8 (2 HSPs)
chr8 (399-449)||(4522965-4523015)
chr8 (387-441)||(4525344-4525398)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 720 - 1089
Target Start/End: Complemental strand, 46245996 - 46245627
Alignment:
720 tgaagggtataataggaaatgacttataatttgggacgggaggagcaattaaatgaaatgatgtcttctattttgtttttggttattatgcctcatcnnn 819  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
46245996 tgaagggtataataggaaatgacttataatttgggacgggaggagcaattaaatgaaatgatgtcttctattttgtttttggttattatgcctcatcttt 46245897  T
820 nnnnnnnnncaagtttcagccatatgaaattatctcacccttacatttcttattttttgaaaacatttaacagatggatacctattcctcatacgtgtga 919  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46245896 ttcttttttcaagtttcagccatatgaaattatctcacccttacatttcttattttttgaaaacatttaacagatggatacctattcctcatacgtgtga 46245797  T
920 atgtgattgctacaagatgcatcttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgcttttgaaataagttttagaaaa 1019  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46245796 atgtgattgctacaagatgcatcttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgcttttgaaataagttttagaaaa 46245697  T
1020 atagtttctttgtgcatacttgaattccataatatcaatttccaaaccaacatttggactctgtcaatga 1089  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46245696 atagtttctttgtgcatacttgaattccataatatcaatttccaaaccaacatttggactctgtcaatga 46245627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 226 - 622
Target Start/End: Complemental strand, 46246504 - 46246108
Alignment:
226 gtgtttgtgtttgtagtgtgattagagatgtgttgccaattttgttctttcacatcagttgcggcctctgttcgaagtttgaattacgagcgtttccagc 325  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
46246504 gtgtttgtgtttgtagtgtgattagagatgtgttgtcaattttgttctttcacatcagttgcggcctctgtttgaagtttgaattacgagcgtttccagc 46246405  T
326 agcagttgcatctaacaagcaaaaatgggtaagtcaattaccttttttcatcttggttgacatgcacttaatccatctgttatgatttaccttttaagtt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
46246404 agcagttgcatctaacaagcaaaaatgggtaagtcaattaccttttttcatcttggttaacatgcacttaatccatctgttatgatttaccttataagtt 46246305  T
426 taaaaccatgtgaagatacaattcnnnnnnnnnnnnnnnnnnatgaaaatgcaacctcttgattgaatgttaatatgcacataaatcttggtattgcggc 525  Q
    ||||||| ||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46246304 taaaaccttgtgaagatacaattcttttttttttccttttttatgaaaatgcaacctcttgattgaatgttaatatgcacataaatcttggtattgcggc 46246205  T
526 catactttggaaaggttatgcttatcttggtattgtttccatactttagaaattcagctcatttaattgctccatccattccaatgataagttgttt 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46246204 catactttggaaaggttatgcttatcttggtattgtttccatactttagaaattcagctcatttaattgctccatccattccaatgataagttgttt 46246108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 720 - 1093
Target Start/End: Original strand, 46021607 - 46021969
Alignment:
720 tgaagggtataataggaaatgacttataatttgggacgggaggagcaattaaatgaaatgatgtcttctattttgtttttggttattatgcctcatcnnn 819  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||       
46021607 tgaagggtataatagaaaatgacttataatttgggacgggaggagcaattaaatga-----tgtcttctattttgtttttggttattatgcctcatcttt 46021701  T
820 nnnnnnnnncaagtttcagccatatgaaattatctcacccttacatttcttattttttgaaaacatttaacagatggatacctattcctcatacgtgtga 919  Q
             ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
46021702 ttcttttttcaagtttcagccatatgaaattatctcaccctttcgttttttattttttgaaaacatttaacagatggatacctattcctcatacgtgtg- 46021800  T
920 atgtgattgctacaagatgcatcttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgcttttgaaataagttttagaaaa 1019  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
46021801 -----attgctacaagatgcatcttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgctttttaaataagttttagaaaa 46021895  T
1020 atagtttctttgtgcatacttgaattccataatatcaatttccaaaccaacatttggactctgtcaatgatgat 1093  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46021896 atagtttctttgtgcatacttgaattccataatatcaatttccaaaccaacatttggactctgtcaatgatgat 46021969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 46013892 - 46014137
Alignment:
17 agagagtaagtagtgaaatggtggttgatgttggtaatgatatgcgtctaagttgaggttttgagaaggtggtgattgtgtgaggtaaggtagaaggaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
46013892 agagagtaagtagtgaaatggtggttgatgttggtaatgatatgcgtctaagttgaggttttgagaaagtggtgattgtgtgaggtaaggtagaaggaga 46013991  T
117 tggaagagaaggttttggtgttggtagtgaagacatggctgtaatctccattgccattgttagttgctagtggttggtttggttgatgatagaggagtga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46013992 tggaagagaaggttttggtgttggtagtgaagacatggctgtaatctccattgccattgttagttgctagtggttggtttggttgatgatagaggagtga 46014091  T
217 agtggagtagtgtttgtgtttg----tagtgtgattagagatgtgt 258  Q
    ||||||||||||||| ||||||    ||||||||||||||||||||    
46014092 agtggagtagtgtttatgtttgtgtttagtgtgattagagatgtgt 46014137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 226 - 509
Target Start/End: Original strand, 46020429 - 46020712
Alignment:
226 gtgtttgtgtttgtagtgtgattagagatgtgttgccaattttgttctttcacatcagttgcggcctctgttcgaagtttgaattacgagcgtttccagc 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
46020429 gtgtttgtgtttgtagtgtgattagagatgtgttgccaattttgttctttcacatcagttgcggcctctgtttgaagtttgaattacgagcgtttccagc 46020528  T
326 agcagttgcatctaacaagcaaaaatgggtaagtcaattaccttttttcatcttggttgacatgcacttaatccatctgttatgatttaccttttaagtt 425  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||    
46020529 agcagttgcatctaacaagcaaaaatgggtaagtcaatcaccttttttcatcttggttaacatgcacttaatccatctgttatgatttaccttatgagtt 46020628  T
426 taaaaccatgtgaagatacaattcnnnnnnnnnnnnnnnnnnatgaaaatgcaacctcttgattgaatgttaatatgcacataa 509  Q
    ||||||||||||||||||||||||                  |||||||||||||||||||||||| |||||||||||||||||    
46020629 taaaaccatgtgaagatacaattctttttgttttccttttttatgaaaatgcaacctcttgattgagtgttaatatgcacataa 46020712  T

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Target: chr4; HSP #6
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 46246696 - 46246534
Alignment:
17 agagagtaagtagtgaaatggtggttgatgttggtaatgatatgcgtctaagttgaggttttgagaaggtggtgattgtgtgaggtaaggtagaaggaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
46246696 agagagtaagtagtgaaatggtggttgatgttggtaatgatatgcgtctaagttgaggttttgagaaagtggtgattgtgtgaggtaaggtagaaggaga 46246597  T
117 tggaagagaaggttttggtgttggtagtgaagacatggctgtaatctccattgccattgttag 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
46246596 tggaagagaaggttttggtgttggtagtgaagacatggctgtaatctccatcgccattgttag 46246534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 472 - 651
Target Start/End: Original strand, 46021346 - 46021538
Alignment:
472 aaatgcaacctcttgattgaatgttaatatgcacataa-------------atcttggtattgcggccatactttggaaaggttatgcttatcttggtat 558  Q
    ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||    
46021346 aaatgcaacctcttgattgaatgttaatatgcacataagttggttatgtttatcttggtattgcggccatactttggaaaggttatgcttatcttggtat 46021445  T
559 tgtttccatactttagaaattcagctcatttaattgctccatccattccaatgataagttgttttgacagattaagaaatgcaattaatgttc 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46021446 tgtttccatactttagaaattcagctcatttaattgctccatccattccaatgataagttgttttgacagattaagaaatgcaattaatgttc 46021538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 46020243 - 46020403
Alignment:
17 agagagtaagtagtgaaatggtggttgatgttggtaatgatatgcgtctaagttgaggttttgagaaggtggtgattgtgtgaggtaaggtagaaggaga 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46020243 agagagtaagtagtgaaatggtggttgatgttggtaacgatatgcgtctaagttgaggttttgagaaggtggtgattgtgtgaggtaaggtagaaggaga 46020342  T
117 tggaagagaaggttttggtgttggtagtgaagacatggctgtaatctccattgccattgtt 177  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||    
46020343 tggaagagaaggttttggtgttggtagtgaagccatagctgcaatctccatcgccattgtt 46020403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 378 - 507
Target Start/End: Original strand, 46015349 - 46015478
Alignment:
378 ttggttgacatgcacttaatccatctgttatgatttaccttttaagtttaaaaccatgtgaagatacaattcnnnnnnnnnnnnnnnnnnatgaaaatgc 477  Q
    |||||| |||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||| |||||                  ||||||||||    
46015349 ttggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctgttttatgaaaatgc 46015448  T
478 aacctcttgattgaatgttaatatgcacat 507  Q
    |||||||||||||| |||||||||||||||    
46015449 aacctcttgattgagtgttaatatgcacat 46015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 943 - 1008
Target Start/End: Original strand, 46428730 - 46428793
Alignment:
943 ttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgcttttgaaataa 1008  Q
    ||||||||||||||||||||||||||||||| |||  || |||||| |||||||||||| ||||||    
46428730 ttaaggcaagttcttctggaaatcttaactaagtt--tgtggccttaagcattgctttttaaataa 46428793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 46020801 - 46020858
Alignment:
391 acttaatccatctgttatgatttaccttttaagtttaaaaccatgtgaagatacaatt 448  Q
    |||| |||||||||||||||||||| |||| | |||||||| ||||||||||||||||    
46020801 acttgatccatctgttatgatttacgttttgactttaaaactatgtgaagatacaatt 46020858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 944 - 1064
Target Start/End: Complemental strand, 46303583 - 46303465
Alignment:
944 taaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgcttttgaaataagttttagaaaaatagtttctttgtgcatacttgaa 1043  Q
    ||||| |||||||||||||||||| ||||| ||| ||| |||||||| |||||||||||| | |||||| | |||  ||  |  |||||||||| || ||    
46303583 taagggaagttcttctggaaatctcaactaagttaatgtggcctttatcattgcttttgatacaagtttcacaaattta--tcttttgtgcatatttcaa 46303486  T
1044 ttccataatatcaatttccaa 1064  Q
    |||  ||||||||||||||||    
46303485 ttctttaatatcaatttccaa 46303465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 558 - 591
Target Start/End: Complemental strand, 46246113 - 46246080
Alignment:
558 ttgtttccatactttagaaattcagctcatttaa 591  Q
    ||||||||||||||||||||||||||||||||||    
46246113 ttgtttccatactttagaaattcagctcatttaa 46246080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 46303904 - 46303835
Alignment:
380 ggttgacatgcacttaatccatctgttatgatttaccttttaagtttaaaaccatgtgaagatacaattc 449  Q
    |||| ||||||| || |||||||||||||||||||  |||| | |||||||| ||||||||| |||||||    
46303904 ggttaacatgcatttcatccatctgttatgatttagattttgactttaaaactatgtgaagacacaattc 46303835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 46246536 - 46246503
Alignment:
206 tagaggagtgaagtggagtagtgtttgtgtttgt 239  Q
    |||| |||||||||||||||||||||||||||||    
46246536 tagaagagtgaagtggagtagtgtttgtgtttgt 46246503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 468 - 509
Target Start/End: Complemental strand, 3802658 - 3802617
Alignment:
468 atgaaaatgcaacctcttgattgaatgttaatatgcacataa 509  Q
    |||||||||||||||||||||||| |||||||||||||||||    
3802658 atgaaaatgcaacctcttgattgagtgttaatatgcacataa 3802617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 385 - 449
Target Start/End: Complemental strand, 3801817 - 3801753
Alignment:
385 acatgcacttaatccatctgttatgatttaccttttaagtttaaaaccatgtgaagatacaattc 449  Q
    ||||||| || |||||||||||||||||||  |||| | |||||||||||||||||| |||||||    
3801817 acatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacacaattc 3801753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 380 - 438
Target Start/End: Complemental strand, 3804179 - 3804121
Alignment:
380 ggttgacatgcacttaatccatctgttatgatttaccttttaagtttaaaaccatgtga 438  Q
    |||| |||||||||| |||||||||||||||||||  |||| | |||||||||||||||    
3804179 ggttaacatgcacttcatccatctgttatgatttaaattttgactttaaaaccatgtga 3804121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 468 - 505
Target Start/End: Original strand, 50668118 - 50668155
Alignment:
468 atgaaaatgcaacctcttgattgaatgttaatatgcac 505  Q
    |||||||||||| ||||| |||||||||||||||||||    
50668118 atgaaaatgcaagctcttaattgaatgttaatatgcac 50668155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 50668580 - 50668621
Alignment:
468 atgaaaatgcaacctcttgattgaatgttaatatgcacataa 509  Q
    |||||||||||| |||||||| || |||||||||||||||||    
50668580 atgaaaatgcaagctcttgatcgagtgttaatatgcacataa 50668621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 4523015 - 4522965
Alignment:
399 catctgttatgatttaccttttaagtttaaaaccatgtgaagatacaattc 449  Q
    ||||||||||||||||  |||| | |||||||||||||||||| |||||||    
4523015 catctgttatgatttagattttgactttaaaaccatgtgaagacacaattc 4522965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 441
Target Start/End: Complemental strand, 4525398 - 4525344
Alignment:
387 atgcacttaatccatctgttatgatttaccttttaagtttaaaaccatgtgaaga 441  Q
    |||||||| |||||||||||||||| ||  |||| | ||||||||||||||||||    
4525398 atgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtgaaga 4525344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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