View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2927_low_2 (Length: 676)
Name: NF2927_low_2
Description: NF2927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2927_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 1108729 - 1109252
Alignment:
| Q |
18 |
ttttgctatccattttggttctcaaatatgtttattgttagacattttgatacttaaaattacaaaacaaaaaccttaagagtgtatttgcaatttaata |
117 |
Q |
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| T |
1108729 |
ttttgctatccattttggttctcaaatatgtttattgttagacattttgatacttaaaattacaaaacaaaaaccttaagagtgtatttgcaatttaata |
1108828 |
T |
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| Q |
118 |
catttgggaacaaaaatgattgttcaacaag-aaagaaaaaccttaccaggttggatgtcaatgtcattgtagaaatcaagagagaatgcattacgtgag |
216 |
Q |
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| T |
1108829 |
catttggggacaaaaatgattgtccaacaagaaaaaaaaaaccttaccaggttggctgtcaatgtcattgtagaaatcaagagagaatgcattacgtgag |
1108928 |
T |
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| Q |
217 |
aattattagtg-nnnnnnnncccttgagagtcaagtaatagaaggaaaggaaaataggaaaataatttgcatagcttcctttatgattctaaatatttcg |
315 |
Q |
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| T |
1108929 |
aattattagtgtttttttttcccttgagagtcaagtaatagaaggaaaggaaaataggaaaataatttgcatagtttcctttatgattctaaatatttca |
1109028 |
T |
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| Q |
316 |
tag--nnnnnnnnaatcaatatcatctgcatgtaactacaaatattaatatctcgaaccagatagaaccacaataagtaacaatgctctcccacaagaga |
413 |
Q |
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| T |
1109029 |
tagttttttttttaatcaatatcatcttcatgcaactacaaatattaata--tcgagccagatagaaccacaataagtaacaatgctctcccacaagaga |
1109126 |
T |
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| Q |
414 |
tttaacactcttgcattctcatgactagtttttaatttgtttatagatattgttcgtgcaaaaatatttttctaaataaatcaaatcatgttttatcatt |
513 |
Q |
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| T |
1109127 |
tttaaca-tcttgcattctcatgactagtttttaatttgtttatagatattgttcgtgcaaaaatatttttct-aataaatcaaatcatgttttatcatt |
1109224 |
T |
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| Q |
514 |
atattaatttataaatattttcatagat |
541 |
Q |
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| T |
1109225 |
atattaatttataaatattttcgtagat |
1109252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 591 - 671
Target Start/End: Original strand, 1109250 - 1109330
Alignment:
| Q |
591 |
gatggtatacatactaataatttgttatggaactcaattttcaaaaggtaaaatgttttgagaaacttgtcagaataatat |
671 |
Q |
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| T |
1109250 |
gatggtatacatacttataatttgttatggaactcaatttttaaaaggtaaaatgttttgagaaacttgtcagaataatat |
1109330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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