View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2927_low_3 (Length: 630)
Name: NF2927_low_3
Description: NF2927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2927_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 12 - 614
Target Start/End: Complemental strand, 34577916 - 34577313
Alignment:
| Q |
12 |
atgaatctgcgctgttatttgagagcagtgtgattttggattgttgtgggaataatatttatgtaaaatgcttagatttgaaggccaaaatcactccaat |
111 |
Q |
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| T |
34577916 |
atgaatctgcgctgttatttgagagcagtgtgattttggattgttgtgggaataatatttatgtaaaatgcttagatttgaaggccaaaatcactccaat |
34577817 |
T |
|
| Q |
112 |
aatcatgtgctgatgaccnnnnnnnattccaattaattaatttattatactttgagtaacttgacacatatttgccagcaacgaactgcataccctccaa |
211 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577816 |
aatcatgtgctgatgacctttttttattccaattaattaatttattatactttgagtaacttgacacatatttgccagcaacgaactgcataccctccaa |
34577717 |
T |
|
| Q |
212 |
tttcttaatgttatgtacctcctataaattaatcaatgttacttctacaaatctctataatctaaaatacgtaaactttttgtaaccnnnnnnngaaata |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34577716 |
tttcttaatgttatgtacctcctataaattaatcaatgttacttctacaaatctctataatctaaaatacgtaaactttttgtaaccaaaaaaagaaata |
34577617 |
T |
|
| Q |
312 |
cgtaaagtttttgctaagaagtacactaacggtatttgcttcttttgattacaggaagtaacagtatatttacatagaaaggaaaaatgaaacgtataat |
411 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34577616 |
cgtaaagtttt-gctaagaagtacactaacggtatttgcttcttttgattacaggaagtaacggtatatttacatagaaaggaaaaatgaaacgtataat |
34577518 |
T |
|
| Q |
412 |
atctataccttaaagtgctttaagactttaattgtaatttaatatttttaatttcttaaattaaatactttcaaaacacttctaacacgtatcataagaa |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34577517 |
atctataccttaaagtgctttaagactttaattgtaatttaatatttttaatttcttacattaaatactttcaaaacacttctaacacgtatcataagaa |
34577418 |
T |
|
| Q |
512 |
atattacatgcatgcaaatcacgtgtttggaaaatgattcgataacacactttttattagaggagaacaaacttatgttgggtaactctc--aattatac |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34577417 |
atattacatgcatgcaaatcacgtgtttggaaaatgattcgataacacactttttattagaggagaacaaacttatgttgggtaactctcaaaattatac |
34577318 |
T |
|
| Q |
610 |
atatg |
614 |
Q |
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||||| |
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| T |
34577317 |
atatg |
34577313 |
T |
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