View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2927_low_6 (Length: 352)

Name: NF2927_low_6
Description: NF2927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2927_low_6
NF2927_low_6
[»] chr3 (10 HSPs)
chr3 (2-352)||(39964549-39964899)
chr3 (49-174)||(7314555-7314682)
chr3 (88-174)||(35443326-35443411)
chr3 (92-174)||(9440410-9440492)
chr3 (218-315)||(35443456-35443553)
chr3 (246-317)||(7314755-7314826)
chr3 (233-317)||(16293661-16293745)
chr3 (256-304)||(23953513-23953561)
chr3 (258-313)||(7487080-7487135)
chr3 (260-317)||(50540639-50540696)
[»] chr1 (6 HSPs)
chr1 (11-313)||(10165466-10165771)
chr1 (88-169)||(25234016-25234097)
chr1 (133-168)||(1179878-1179913)
chr1 (260-302)||(25141121-25141163)
chr1 (88-174)||(25141270-25141356)
chr1 (93-174)||(16988784-16988865)
[»] chr5 (5 HSPs)
chr5 (43-193)||(30292249-30292401)
chr5 (88-165)||(16440192-16440269)
chr5 (133-168)||(43179673-43179708)
chr5 (261-304)||(20159637-20159680)
chr5 (118-168)||(6267724-6267774)
[»] chr2 (11 HSPs)
chr2 (38-316)||(27732932-27733213)
chr2 (9-66)||(26228641-26228698)
chr2 (88-317)||(42809205-42809435)
chr2 (221-305)||(10990907-10990991)
chr2 (260-305)||(26832073-26832118)
chr2 (247-310)||(30938861-30938924)
chr2 (119-176)||(30939016-30939073)
chr2 (109-168)||(25613443-25613502)
chr2 (19-73)||(26831859-26831913)
chr2 (88-161)||(43668341-43668414)
chr2 (260-304)||(20566349-20566393)
[»] chr4 (8 HSPs)
chr4 (38-174)||(31598660-31598797)
chr4 (118-168)||(6186898-6186948)
chr4 (247-317)||(6936321-6936391)
chr4 (247-316)||(25658770-25658839)
chr4 (119-174)||(1470440-1470495)
chr4 (203-292)||(31598827-31598916)
chr4 (267-315)||(43609820-43609868)
chr4 (88-174)||(6936141-6936227)
[»] chr8 (4 HSPs)
chr8 (118-168)||(30972647-30972697)
chr8 (250-313)||(27675389-27675452)
chr8 (118-168)||(22661347-22661397)
chr8 (118-168)||(31281060-31281112)
[»] chr6 (6 HSPs)
chr6 (118-174)||(20439772-20439828)
chr6 (118-168)||(19129224-19129274)
chr6 (118-168)||(20448560-20448610)
chr6 (119-174)||(20436064-20436119)
chr6 (267-305)||(31177813-31177851)
chr6 (267-305)||(31198425-31198463)
[»] chr7 (1 HSPs)
chr7 (88-174)||(5731869-5731955)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 39964549 - 39964899
Alignment:
Q  2 aattcagaatatttactacctgtaaatcaaaacaaaaatttcagaggtagtacaacctatacaccaattataatcattcaagtagtaacaatacataaat 101  Q
    |||||||  |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39964549 aattcagtctatttattacctgtaaatcaaaacaaaaattttagaggtagtgcaacctatacaccaattataatcattcaagtagtaacaatacataaat 39964648  T
Q  102 tttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaaatccagtagtaagtgtaaacaacagaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||  |    
T  39964649 tttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacatgaatgtttgaaattcaagaaaaatgcagtagtaagtgtaaataacaaca 39964748  T
Q  202 aattacacaacattgcatgaaatctctcctgacattcttgacacatgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaa 301  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  39964749 aattacacaacattgcatgaaatctctcctgacattcttaacgcatgcagttggagcaaacacaaagatataacgtattattttcaaccatcgacctaaa 39964848  T
Q  302 catagattctacgtcgttcacgaacaacgcaacgaaaatatatcgttttcc 352  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  39964849 catagattctacgtcgttcacgaacaacacaacgaaaataaatcgttttcc 39964899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 7314555 - 7314682
Alignment:
Q  49 tagtacaacctatacaccaattataatcattca--agtagtaacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaa 146  Q
    ||||||||| ||||||||||||||||| | |||  | ||  ||||||||||||  |||||  |||||||||||||||||| ||||||||||| |||||||    
T  7314555 tagtacaacttatacaccaattataattaatcataaataagaacaatacataatctttcacaattgaccaaaattaaatcaattcgacattttgttaaaa 7314654  T
Q  147 ttacacgaatgtttgaaattcaagaaaa 174  Q
    ||| ||||||||||||||||||| ||||    
T  7314655 ttatacgaatgtttgaaattcaacaaaa 7314682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 35443326 - 35443411
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    |||||| ||||| ||||||  |||||||||||||||||  ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  35443326 aacaatgcataatttttcacaattgaccaaaattaaattaatttgacatttcgttaaaa-tacacgaatgtttgaaattcaacaaaa 35443411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 9440492 - 9440410
Alignment:
Q  92 atacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    ||||||||  |||||  ||||||||| |||||||| |||||||||| ||||||||||||| || |||||||||||||| ||||    
T  9440492 atacataatctttcacaattgaccaagattaaatcaattcgacattacgttaaaattacatgattgtttgaaattcaacaaaa 9440410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 35443456 - 35443553
Alignment:
Q  218 atgaaatctctcctgacattcttgacacatgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattctacgt 315  Q
    ||||||||| | |||||||||||  ||| ||||||||||   ||||||||||||||| |||||||||||||||||   |||||||||| || ||||||    
T  35443456 atgaaatctttactgacattcttcgcacgtgcagttgaaatgaacacaaagatataatatattattttcaaccatatgcctaaacataaatcctacgt 35443553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 7314755 - 7314826
Alignment:
Q  246 atgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattctacgtcg 317  Q
    ||||||||| | ||||||||||||||||| ||||| |||||||||||   |||||||||| |||||||||||    
T  7314755 atgcagttggaacaaacacaaagatataatatattgttttcaaccatatgcctaaacataaattctacgtcg 7314826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 16293745 - 16293661
Alignment:
Q  233 acattcttgacacatgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattctacgtcg 317  Q
    ||||||| | ||| |||||||||| ||||||||||||| ||||| |||||||||||  |||  |||||||||| |||||| ||||    
T  16293745 acattctaggcacctgcagttgaaacaaacacaaagatgtaacacattattttcaaagatcctcctaaacataaattctatgtcg 16293661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 23953513 - 23953561
Alignment:
Q  256 agcaaacacaaagatataacatattattttcaaccatcgacctaaacat 304  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  23953513 agcagacacaaagatgtaacatattattttcaatcatcgacctaaacat 23953561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 7487080 - 7487135
Alignment:
Q  258 caaacacaaagatataacatattattttcaaccatcgacctaaacatagattctac 313  Q
    |||||||||||||| | | |||||||||||| |||||| |||||||||||| ||||    
T  7487080 caaacacaaagataaagcttattattttcaatcatcgatctaaacatagatgctac 7487135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 50540696 - 50540639
Alignment:
Q  260 aacacaaagatataacatattattttcaaccatcgacctaaacatagattctacgtcg 317  Q
    |||||| |||| ||||| ||||||||||||||||  |||||||||| || ||||||||    
T  50540696 aacacagagatgtaacacattattttcaaccatcctcctaaacataaatcctacgtcg 50540639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 10165771 - 10165466
Alignment:
Q  11 tatttactacctgtaaatcaaaacaaaaatttcagaggtagtacaacctatacaccaattataatcattca--agtagtaacaatacataaattttcatg 108  Q
    |||||| ||| ||||| ||||||||| |||||||||  | |||||||| |||||||||||||||||  |||  || |  |||||| |||||  |||||      
T  10165771 tatttattacatgtaattcaaaacaacaatttcagatatggtacaacccatacaccaattataatccatcataagcaagaacaatgcataatctttcacc 10165672  T
Q  109 attgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa-atccagtagtaagtgtaaa-caacagaaaatta 206  Q
    |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |||| ||  || |||   || ||  |||||  | ||||    
T  10165671 attgacaaaaattaaatcaattcaacattttgttaaaattacacgaatgtttgaaattcaacaaaagataaag-agtgtttgaaattcaacaacacatta 10165573  T
Q  207 cacaacattgcatgaaatctctcctgacattcttgacacatgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatag 306  Q
    ||||||||| |||||||||||| | |||||||||| |||||||||||| | |  |||||||||||||| ||||||||||||||||||||||||||||||     
T  10165572 cacaacattacatgaaatctctacagacattcttggcacatgcagttggaacggacacaaagatataatatattattttcaaccatcgacctaaacataa 10165473  T
Q  307 attctac 313  Q
    |||||||    
T  10165472 attctac 10165466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 25234097 - 25234016
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaa 169  Q
    ||||||||||||  |||||  ||||| |||||||||||  |||| ||||||||||||||| |||||||||||||||||||||    
T  25234097 aacaatacataatctttcacaattgatcaaaattaaattaattcaacatttcgttaaaataacacgaatgtttgaaattcaa 25234016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 1179878 - 1179913
Alignment:
Q  133 acatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||||||||||||||||||||||||||||||    
T  1179878 acatttcgttaaaattacacgaatgtttgaaattca 1179913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 25141163 - 25141121
Alignment:
Q  260 aacacaaagatataacatattattttcaaccatcgacctaaac 302  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  25141163 aacacaaagatataacacattattttcaaccatcgatctaaac 25141121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 25141356 - 25141270
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    |||| ||||||| ||||||| ||| |  || |||||||| |||||||| |  ||||| |||||||||||||||||||||||| ||||    
T  25141356 aacactacataatttttcataattcattaacattaaatcaattcgacactaagttaacattacacgaatgtttgaaattcaacaaaa 25141270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 16988865 - 16988784
Alignment:
Q  93 tacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    ||||||| ||||||||||| |   | |||||||| |||||||||  ||| || |||||||||||| ||||||||||| ||||    
T  16988865 tacataacttttcatgattcaatgagattaaatcaattcgacatcacgtgaacattacacgaatgattgaaattcaacaaaa 16988784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 30292249 - 30292401
Alignment:
Q  43 cagaggtagtacaacctatacaccaattataatcattca--agtagtaacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcg 140  Q
    ||||||||||||||||| || |||||||||||||| |||  || |  |||||||||||| |||  |  |||||||||||||||||| |||||||||||||    
T  30292249 cagaggtagtacaacctttaaaccaattataatcactcacaagcaagaacaatacataattttgtacaattgaccaaaattaaatcaattcgacatttcg 30292348  T
Q  141 ttaaaattacacgaatgtttgaaattcaagaaaaatccagtagtaagtgtaaa 193  Q
    ||||||||||||||||||| ||||||||| |||| | || ||||| |||||||    
T  30292349 ttaaaattacacgaatgttcgaaattcaacaaaagtgcaatagtaggtgtaaa 30292401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 16440269 - 16440192
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaat 165  Q
    ||||||||||||  ||| |  |||||||| ||||||||| || ||| |||||||||||||||||||||||||| ||||    
T  16440269 aacaatacataatattttagaattgaccataattaaatcaatccgatatttcgttaaaattacacgaatgtttaaaat 16440192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 43179708 - 43179673
Alignment:
Q  133 acatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||||||||||||||||||||||||||||||    
T  43179708 acatttcgttaaaattacacgaatgtttgaaattca 43179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 20159637 - 20159680
Alignment:
Q  261 acacaaagatataacatattattttcaaccatcgacctaaacat 304  Q
    |||||||||| |||||||||||||||||||||| | ||||||||    
T  20159637 acacaaagatgtaacatattattttcaaccatcaatctaaacat 20159680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 6267724 - 6267774
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||| || ||||||||| |||||||| || ||||||||||||||||    
T  6267724 aattaaatcaatccgacatttcattaaaattgcaagaatgtttgaaattca 6267774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 38 - 316
Target Start/End: Complemental strand, 27733213 - 27732932
Alignment:
Q  38 aatttcagaggtagtacaacctatacaccaattataatcattc--aagtagtaacaatacataaattttcatgattgaccaaaattaaatctattcgaca 135  Q
    ||||||||||| ||||||||  ||||||||||||||||||  |  ||  |  | ||||||||||  |||||  |||||||||||||||||| ||||||||    
T  27733213 aatttcagaggcagtacaactaatacaccaattataatcagccgtaaacaagatcaatacataatctttcacaattgaccaaaattaaatcaattcgaca 27733114  T
Q  136 tttcgttaaaattacacgaatgtttgaaattcaagaaaa-atccagtagtaagtgtaaac---aacagaaaattacacaacattgcatgaaatctctcct 231  Q
    |||||||||||||| | |||||||| |||| ||| |||| ||  || |||  ||   |||   ||||  | |||||| |||||| |||||||||||| ||    
T  27733113 tttcgttaaaattatatgaatgttttaaatacaacaaaacatgaag-agt--gttcgaactcgaacaacacattacataacattacatgaaatctctact 27733017  T
Q  232 gacattcttgacacatgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattctacgtc 316  Q
    |||||| |   ||| |||||||| | | ||||||||||||||| |||||||||| ||||||   |||| ||||| ||||||||||    
T  27733016 gacattatgcgcacgtgcagttggaacgaacacaaagatataatatattatttttaaccatattcctatacataaattctacgtc 27732932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 26228641 - 26228698
Alignment:
Q  9 aatatttactacctgtaaatcaaaacaaaaatttcagaggtagtacaacctatacacc 66  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  26228641 aatatttattacctgtaattcaaaacaacaatttcagaggtagtacaacctatacacc 26228698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 317
Target Start/End: Complemental strand, 42809435 - 42809205
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa-atccagtagtaa 186  Q
    ||||||||||||  |||||  |||||| ||||||||||| ||   ||||||||| ||||||||||||||||||||||||||| |||| ||  |  |||      
T  42809435 aacaatacataatctttcacaattgactaaaattaaatcaatctcacatttcgt-aaaattacacgaatgtttgaaattcaacaaaacataaaagagtgt 42809337  T
Q  187 gtg----taaacaacagaaaattacacaacattgcatgaaatctctcctgacattcttgacacatgcagttgaagcaaacacaaagatataacatattat 282  Q
     ||    ||||||||| ||   |||| |||||| ||| ||||||||  |||||||||  |||||||||| || | ||||||||||||||||| ||||| |    
T  42809336 ttgaaattaaacaacacaa---tacataacattacataaaatctctattgacattctacacacatgcagatggaacaaacacaaagatataatatattgt 42809240  T
Q  283 tttcaaccatcgacctaaacatagattctacgtcg 317  Q
     |||||||||   |||||||||| || ||||||||    
T  42809239 cttcaaccatgagcctaaacataaatcctacgtcg 42809205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 10990991 - 10990907
Alignment:
Q  221 aaatctctcctgacattcttgacacatgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacata 305  Q
    |||||| | |||||| ||| ||||  |||||||| | | |||||| |||||||||| ||||||||||||||||||||||||||||    
T  10990991 aaatctatactgacaatctggacagttgcagttggaacgaacacagagatataacacattattttcaaccatcgacctaaacata 10990907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 26832073 - 26832118
Alignment:
Q  260 aacacaaagatataacatattattttcaaccatcgacctaaacata 305  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||    
T  26832073 aacacaaagatataaaacattattttcaaccatcgacctaaacata 26832118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 30938924 - 30938861
Alignment:
Q  247 tgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattc 310  Q
    |||||||| | |||||||| ||||||| || |||||||| ||||||||||||||||||| ||||    
T  30938924 tgcagttggaacaaacacagagatatagcacattatttttaaccatcgacctaaacataaattc 30938861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 30939073 - 30939016
Alignment:
Q  119 attaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaaat 176  Q
    |||||||| ||| |||||| |||||| ||||||||||||||||||||| || ||||||    
T  30939073 attaaatcaatttgacattacgttaacattacacgaatgtttgaaatttaacaaaaat 30939016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 25613443 - 25613502
Alignment:
Q  109 attgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattca 168  Q
    |||||||||||||||||| ||  | ||||| ||| |||||||| ||||||||||||||||    
T  25613443 attgaccaaaattaaatcaatcaggcattttgtttaaattacaagaatgtttgaaattca 25613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 26831859 - 26831913
Alignment:
Q  19 acctgtaaatcaaaacaaaaatttcagaggtagtacaacctatacaccaattata 73  Q
    |||||||| ||||||| | ||||||||||| ||||||||| ||||||||| ||||    
T  26831859 acctgtaattcaaaacgacaatttcagaggaagtacaaccaatacaccaagtata 26831913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 43668341 - 43668414
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttg 161  Q
    ||||||||||||  |||||  | |||||||||||||||| ||  || ||||| |||||||||||| ||||||||    
T  43668341 aacaatacataatctttcacaactgaccaaaattaaatcaatctgatatttcattaaaattacacaaatgtttg 43668414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 20566349 - 20566393
Alignment:
Q  260 aacacaaagatataacatattattttcaaccatcgacctaaacat 304  Q
    |||||||| ||||||  ||||||||||||||||| ||||||||||    
T  20566349 aacacaaaaatataatttattattttcaaccatcaacctaaacat 20566393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 31598660 - 31598797
Alignment:
Q  38 aatttcagaggtagtacaacctatacaccaattataatcattca--agtagtaacaatacataaattttcatgattgaccaaaattaaatctattcgaca 135  Q
    |||| |||||| ||||||||  ||||| |||||||||||| |||  |  |  ||||||||||||  |||||  ||||| |||||||||||| ||||||||    
T  31598660 aattccagaggcagtacaactcatacatcaattataatcagtcataaacaagaacaatacataatctttcacaattgatcaaaattaaatcaattcgaca 31598759  T
Q  136 tttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    || ||||||||||||| ||||||||||||||||| ||||    
T  31598760 tt-cgttaaaattacatgaatgtttgaaattcaacaaaa 31598797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 6186898 - 6186948
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  6186898 aattaaatcaatccgacatttcgttaaaattacacgtatgtttgaaattca 6186948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 6936321 - 6936391
Alignment:
Q  247 tgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattctacgtcg 317  Q
    |||||||| | | |||||||||||| |||| ||||||||||||| |||||||||||||| |||||| ||||    
T  6936321 tgcagttggaacgaacacaaagatacaacacattattttcaaccgtcgacctaaacataaattctatgtcg 6936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 25658770 - 25658839
Alignment:
Q  247 tgcagttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattctacgtc 316  Q
    |||||||| | | |||||| ||||||||| |||||||||||||||  |||||||||||| ||||||||||    
T  25658770 tgcagttggaacgaacacatagatataacctattattttcaaccacagacctaaacatatattctacgtc 25658839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 1470495 - 1470440
Alignment:
Q  119 attaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    |||||||| ||||||||||  ||||| |||||||||||||||||||||||| ||||    
T  1470495 attaaatcaattcgacattaagttaacattacacgaatgtttgaaattcaacaaaa 1470440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 31598827 - 31598916
Alignment:
Q  203 attacacaacattgcatgaaatctctcctgacattcttgacacatgcagttgaagcaaacacaaagatataacatattattttcaaccat 292  Q
    |||||| ||||||  ||||||||||| ||||||||||   |||||||||||  | | | |||||| |||||| |||||||||||||||||    
T  31598827 attacataacattatatgaaatctctactgacattctacgcacatgcagttagaacgaccacaaatatataatatattattttcaaccat 31598916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 43609868 - 43609820
Alignment:
Q  267 agatataacatattattttcaaccatcgacctaaacatagattctacgt 315  Q
    |||||||||| |||||||||||| ||||||| ||||||| |||||||||    
T  43609868 agatataacacattattttcaacaatcgacccaaacataaattctacgt 43609820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 6936141 - 6936227
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    |||| ||||||| ||||||||||| |  || |||||||| ||||| |||| ||| |  |||||||||||| ||||||||||| ||||    
T  6936141 aacattacataatttttcatgattcattaatattaaatcaattcggcattacgtgagcattacacgaatgattgaaattcaacaaaa 6936227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 30972697 - 30972647
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  30972697 aattaaatcaattcaacatttcgttaaaattacacgaatgtttgaaattca 30972647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 27675389 - 27675452
Alignment:
Q  250 agttgaagcaaacacaaagatataacatattattttcaaccatcgacctaaacatagattctac 313  Q
    ||||| |||| |||||||||| |||| ||||||||||||||||  ||||||||||  |||||||    
T  27675389 agttggagcagacacaaagatgtaacttattattttcaaccattaacctaaacatttattctac 27675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 22661397 - 22661347
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||| |  ||| |||||||||||||||||||||||||||| |||||    
T  22661397 aattaaatcaaaccgatatttcgttaaaattacacgaatgtttgagattca 22661347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 31281060 - 31281112
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaatt--acacgaatgtttgaaattca 168  Q
    ||||||||| ||  |||||||||||||||||  ||||||||||||||||||||    
T  31281060 aattaaatcaatctgacatttcgttaaaattttacacgaatgtttgaaattca 31281112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 20439828 - 20439772
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    ||||||||| || |||||||| |||||||||||| |||||||||||||||| |||||    
T  20439828 aattaaatcaatccgacattttgttaaaattacaggaatgtttgaaattcatgaaaa 20439772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 19129224 - 19129274
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||| ||  ||||||||||| |||||||||||||||||||||||||    
T  19129224 aattaaatcaatctgacatttcgttgaaattacacgaatgtttgaaattca 19129274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 20448610 - 20448560
Alignment:
Q  118 aattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattca 168  Q
    ||||||||| || ||||||||||||||||||| | ||||||||||||||||    
T  20448610 aattaaatcaatccgacatttcgttaaaattagaggaatgtttgaaattca 20448560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 20436119 - 20436064
Alignment:
Q  119 attaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    |||||||| || ||||||||  ||||||||||| |||||||||||||||| |||||    
T  20436119 attaaatcaatccgacattttattaaaattacatgaatgtttgaaattcatgaaaa 20436064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 31177851 - 31177813
Alignment:
Q  267 agatataacatattattttcaaccatcgacctaaacata 305  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  31177851 agatataacataatattttcaaccatagacctaaacata 31177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 31198463 - 31198425
Alignment:
Q  267 agatataacatattattttcaaccatcgacctaaacata 305  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  31198463 agatataacataatattttcaaccatagacctaaacata 31198425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 5731869 - 5731955
Alignment:
Q  88 aacaatacataaattttcatgattgaccaaaattaaatctattcgacatttcgttaaaattacacgaatgtttgaaattcaagaaaa 174  Q
    ||||||||||||  | |||  ||||| |||||||||||  ||| | ||||||||||| |||||||||| |||| |||||||| ||||    
T  5731869 aacaatacataatctatcacaattgatcaaaattaaataaatttggcatttcgttaatattacacgaacgttttaaattcaacaaaa 5731955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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