View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2928_high_1 (Length: 556)
Name: NF2928_high_1
Description: NF2928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2928_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 6586602 - 6586918
Alignment:
| Q |
16 |
aattgtagtcttcacacgaaatgtaaataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtttcattaat |
115 |
Q |
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| T |
6586602 |
aattgtagtct-cacaccaaatgtaaataacatgagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtttcattaat |
6586700 |
T |
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| Q |
116 |
cttattattgttaacaatcatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccatctctccaaattatatcaaacc |
215 |
Q |
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| T |
6586701 |
cttattattgttaacaattatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccatctctccaaattatatcaaacc |
6586800 |
T |
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| Q |
216 |
caaccatacaatttaatgattattacatatccattactgtatctaatctaagtaatttaataattaaaatttctccctaagttgacattctttacccacc |
315 |
Q |
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| T |
6586801 |
caaccatacaatttaatgattattacatatccattactgtatctaatctaagtaatttaataattagaatttctccctaagttgacattctttacccacc |
6586900 |
T |
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| Q |
316 |
atgaaacccacgtaatca |
333 |
Q |
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| T |
6586901 |
atgaaacccacgtaatca |
6586918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 336 - 550
Target Start/End: Original strand, 6586951 - 6587166
Alignment:
| Q |
336 |
tcacattcctcccccattttccccctctaattctcgtggtcccacttttggcactgatcggcttatctgtatgggcctatggtagattctttgtcacaca |
435 |
Q |
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| T |
6586951 |
tcacattcctccctcattttccccctctaattctcgtggtcccacttttggcactgatcggcttatctgtatgggcctatggtagattctttgtcacaca |
6587050 |
T |
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| Q |
436 |
agtagaagtagccatgtgtatataatgaagtaaagcaccacacaagtccctatcaaatcaaggata-ttaaccccatcaactcatggaattagaactttc |
534 |
Q |
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| T |
6587051 |
agtagaagtagccatgtgtatataatgaagtaaagcaccacacaggttcctatcaaatcaaggatatttaaccccatcaactcatggaattagaactttc |
6587150 |
T |
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| Q |
535 |
accttttcatctctct |
550 |
Q |
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| T |
6587151 |
accttttcatcactct |
6587166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 24191173 - 24191107
Alignment:
| Q |
41 |
aataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtt |
107 |
Q |
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|||||| |||||||||||||||||||||| |||| ||| |||| | |||||||||||| |||||||| |
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| T |
24191173 |
aataacttaagtatgtcaatctcatcgaaagatcccttgaatacgccaaaccaaagaaggaatggtt |
24191107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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