View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2928_high_3 (Length: 291)

Name: NF2928_high_3
Description: NF2928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2928_high_3
NF2928_high_3
[»] chr8 (4 HSPs)
chr8 (1-276)||(4620178-4620453)
chr8 (1-151)||(1846880-1847030)
chr8 (5-185)||(4787123-4787303)
chr8 (5-191)||(4297965-4298151)
[»] chr1 (13 HSPs)
chr1 (1-178)||(40034320-40034497)
chr1 (1-169)||(7890673-7890841)
chr1 (4-178)||(51292106-51292280)
chr1 (5-158)||(7888419-7888572)
chr1 (1-161)||(38137497-38137657)
chr1 (1-178)||(45983332-45983509)
chr1 (1-191)||(43045935-43046125)
chr1 (1-191)||(45993099-45993289)
chr1 (1-153)||(3301218-3301370)
chr1 (1-162)||(43084363-43084524)
chr1 (1-153)||(43066320-43066472)
chr1 (1-78)||(43045482-43045559)
chr1 (212-257)||(45983246-45983291)
[»] chr2 (5 HSPs)
chr2 (1-162)||(34691313-34691474)
chr2 (1-162)||(34713725-34713886)
chr2 (1-162)||(16232662-16232823)
chr2 (1-169)||(33861324-33861495)
chr2 (212-257)||(33861558-33861603)
[»] chr4 (2 HSPs)
chr4 (1-153)||(4231955-4232107)
chr4 (94-167)||(19964623-19964696)
[»] chr5 (1 HSPs)
chr5 (92-183)||(16352207-16352298)
[»] chr6 (2 HSPs)
chr6 (5-153)||(7528735-7528883)
chr6 (2-153)||(7519364-7519515)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 4620178 - 4620453
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4620178 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacatcctttttaatacctccaagc 4620277  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccattattgcacctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620278 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccattattgcacctt 4620377  T
Q  201 aatcttggaattctgccaattcaacacagaaaacaacaggacattagtaaaataaattactttcagtatgctagct 276  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4620378 aatcttggaattctgccaattcaacacagaaaacaacaggacataagtaaaataaattactttcagtatgctagct 4620453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 1846880 - 1847030
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||    
T  1846880 gagcttgtcaagcacccaagcatacttgaatgaacgcctgtttatctcagcagcttctttctcaaatctctcgatgacatccttttcaatacctccaagc 1846979  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgacca 151  Q
    |||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  1846980 ttgtagatcaaatgaccagccgtcgttgacttcccggagtcgacatgacca 1847030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 4787303 - 4787123
Alignment:
Q  5 ttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgt 104  Q
    |||||||||||||||||||| |||||||||  |  |||   ||||   ||||||||||||| || ||||||||| ||||||  ||| |||||||||||||    
T  4787303 ttgtcaagcacccaagcatacttgaatgaaggccagttagcctcataagcttctttctcaagtctctcaatgacatcctttccaatgcctccaagcttgt 4787204  T
Q  105 agatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttat 185  Q
    ||| ||||||| |||  |||||||||||||| |||| | | |||||||||| |||||| ||||||| ||||||| ||||||    
T  4787203 agagcaaatgagcagtggtggttgacttcccggagttggcttgaccaataaccacaatgttaatacgaaccttttctttat 4787123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 4297965 - 4298151
Alignment:
Q  5 ttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgt 104  Q
    |||||||| ||||||||||| ||||| |||  |||||| | |||| |  || ||||||||| || ||||||||| ||||||| ||| ||||| || ||||    
T  4297965 ttgtcaagtacccaagcatacttgaacgaaggcatgttaacctcaacatctactttctcaagtctctcaatgacatccttttcaatgcctccgagtttgt 4298064  T
Q  105 agatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccatta 191  Q
    ||| ||||||| ||| ||||||||||||||| |||| | |||| ||||||| |||||| ||||||| | |||||   ||||||||||    
T  4298065 agagcaaatgagcagtagtggttgacttcccggagttggcatggccaataaccacaatgttaatacgagcctttttcttatccatta 4298151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 40034497 - 40034320
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||| ||||||||||| |||||||| | | |||| |||||||| |||||||||||||||  ||||||||| |||||||||||||| ||||||    
T  40034497 gagcttgtcaagtacccaagcatacttgaatgagcgcttgttcatctcagcagcttctttctcaaatttctcaatgacatcctttttaataccgccaagc 40034398  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 178  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| || || ||||||  |||||||    
T  40034397 ttgtagatcaaatgaccaccagtggttgacttcccagagtcgacattaccaataaatacgatgttaatatgaaccttt 40034320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 7890841 - 7890673
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||| |||||||||  | |||| |||||||| ||||||||||||||||  || ||||| ||||||| |||||||||||||    
T  7890841 gagcttgtcaagcacccaagcatacttgaatgaatgcctgttcatctcagcagcttctttctcaaatctatcgatgacatccttttcaatacctccaagc 7890742  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaata 169  Q
    |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||| ||||||    
T  7890741 ttgtagatcaaatgaccagccgtcgttgacttcccggagtcgacatgaccaataaacagaatgttaata 7890673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 51292106 - 51292280
Alignment:
Q  4 cttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttg 103  Q
    |||||||||||||||||||||  ||||||||| |||||| |||||||  ||||||||||||| || ||||||| | | ||| | ||||||||||||||||    
T  51292106 cttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctcagtagcttctttctcaagtctctcaatgtcattcttgtcaatacctccaagcttg 51292205  T
Q  104 tagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 178  Q
    ||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||    
T  51292206 tagatcaaatgaccagcagtatttgactttccatagtcgacatgaccaataaacacaatgttaatacgaaccttt 51292280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 7888572 - 7888419
Alignment:
Q  5 ttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgt 104  Q
    |||||||||||||||||||| |||||| |||   ||||||||||||| ||||||||||||| |  ||| ||||| ||||||| |||||||||||||||||    
T  7888572 ttgtcaagcacccaagcatacttgaataaacgtctgtttatctcagcagcttctttctcaagtttctcgatgacatccttttcaatacctccaagcttgt 7888473  T
Q  105 agatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaaca 158  Q
    ||||||||||||||||||||||||||||||| || || ||||||||||||||||    
T  7888472 agatcaaatgaccagcagtggttgacttcccggaatcaacatgaccaataaaca 7888419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 38137657 - 38137497
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    ||||||||| |||||||||||||| ||||| ||   | ||||||||||||  ||||||||||||| || ||||||||| ||||||| ||||||||||||     
T  38137657 gagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagcttctttctcaagtctctcaatgacatccttttcaatacctccaagt 38137558  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaa 161  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  38137557 ttgtagatcaaatgaccagcagtagttgacttcccagagtcaacatgaccaataaccacaa 38137497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 45983509 - 45983332
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||| |||||||||| | |||| |||| ||| |||||||||||||  | |||||||||   ||| | ||||| ||||||     
T  45983509 gagcttgtcaagcacccaagcatacttgaatgaacgcttgttcatcttagcagcttctttctcaagactctcaatgacactcttgtgaatacatccaagt 45983410  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 178  Q
    |||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||| ||||||| |||||||    
T  45983409 ttgtggatcaaatgaccagtagtggttgacttcccggagtccacatgaccaataaccacaatgttaatacgaaccttt 45983332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 43045935 - 43046125
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||| ||||| ||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||   ||| | |||||||||||||    
T  43045935 gagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgacacgcttgtcaatacctccaagc 43046034  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccatta 191  Q
    ||||||||||| |||||||  |||||||| ||||||||||||||||| ||||| | |||||| || ||   ||||||| ||||| ||||||    
T  43046035 ttgtagatcaagtgaccagtggtggttgatttcccagagtcgacatggccaatgaccacaatgttgatgtgaaccttttctttacccatta 43046125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 45993289 - 45993099
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||| |||||||||| | || | |||||||| |||||||||||||  | ||| |||||   ||| | ||||| ||||||     
T  45993289 gagcttgtcaagcacccaagcatacttgaatgaacgcttgatcatctcagcagcttctttctcaagactctcgatgacactcttgtgaatacatccaagt 45993190  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccatta 191  Q
    |||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||  |||||  ||||||| | ||||||||||    
T  45993189 ttgtggatgaaatgaccagtagtggttgacttcccggagtcgacatgaccaataaccacaatgctaataggaaccttttccttatccatta 45993099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3301218 - 3301370
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    ||||||||| |||||||||||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||| ||   ||| | |||||||||||||    
T  3301218 gagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagc 3301317  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaat 153  Q
    ||||||||||| ||||| |  |||||||||||||| |||||||||||||||||    
T  3301318 ttgtagatcaagtgaccggtggtggttgacttcccggagtcgacatgaccaat 3301370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 43084363 - 43084524
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||| ||||| ||||| |||||||||| | |||| |||||||| |||||||||||||| | ||| |||||   ||| | |||||||||||||    
T  43084363 gagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctctatgacacgcttgtcaatacctccaagc 43084462  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaat 162  Q
    ||||||||||| |||||||  |||||||| ||||||||||| ||||| ||||| | ||||||    
T  43084463 ttgtagatcaagtgaccagttgtggttgatttcccagagtcaacatggccaatgaccacaat 43084524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 43066472 - 43066320
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||| ||||| ||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||   ||| | ||||||||||||     
T  43066472 gagcttgtcaagaacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgacacgcttgtcaatacctccaagt 43066373  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaat 153  Q
    |||||||| || |||||||  ||||||||||| |||||||||||||| |||||    
T  43066372 ttgtagattaagtgaccagtggtggttgacttgccagagtcgacatggccaat 43066320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43045482 - 43045559
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgac 78  Q
    |||||||||||| ||||| ||||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||    
T  43045482 gagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgac 43045559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 45983291 - 45983246
Alignment:
Q  212 tctgccaattcaacacagaaaacaacaggacattagtaaaataaat 257  Q
    |||||||||||||||||||||  |||| ||||| ||||||||||||    
T  45983291 tctgccaattcaacacagaaagtaacaagacataagtaaaataaat 45983246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 34691313 - 34691474
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||| |||||||||| | | || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||    
T  34691313 gagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagc 34691412  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaat 162  Q
    ||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||    
T  34691413 ttgtaaatcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaat 34691474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 34713725 - 34713886
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||| |||||||||| | | || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||    
T  34713725 gagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagc 34713824  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaat 162  Q
    ||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||    
T  34713825 ttgtaaatcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaat 34713886  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 16232662 - 16232823
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||||||||||||||| |||||||||| ||| || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||    
T  16232662 gagcttgtcaagcacccaagcatacttgaatgaacgcatcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttgaatacctccaagc 16232761  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaat 162  Q
    ||||| | ||||||||| ||||| |||||||||||||| | ||||||||||||||| |||||    
T  16232762 ttgtaaagcaaatgaccggcagtagttgacttcccagaattgacatgaccaataaagacaat 16232823  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 33861324 - 33861495
Alignment:
Q  1 gagcttgtcaagcacccaa---gcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctcca 97  Q
    |||||||||||| ||||||   ||||| |||||||||||| |||  |||| ||| ||||||| |||||  |  |||||||| | ||| | ||||| ||||    
T  33861324 gagcttgtcaagaacccaattagcatacttgaatgaacacttgtcgatctgagcagcttcttcctcaagactgtcaatgacatgcttgtcaatacatcca 33861423  T
Q  98 agcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaata 169  Q
    ||||||| || ||||||||| |  |||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  33861424 agcttgtggagcaaatgaccggttgtggttgacttcccagagtcaacatgaccaataaccacaatgttaata 33861495  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 33861558 - 33861603
Alignment:
Q  212 tctgccaattcaacacagaaaacaacaggacattagtaaaataaat 257  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  33861558 tctgccaattcaacaaagaaaacaacaagacatgagtaaaataaat 33861603  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4231955 - 4232107
Alignment:
Q  1 gagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagc 100  Q
    |||||||||||| ||||||||||| || ||||||| | |||| |||||||| |||||||||||||| | |||||| ||   ||| | |||||||||||||    
T  4231955 gagcttgtcaagaacccaagcatacttaaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagc 4232054  T
Q  101 ttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaat 153  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||| |||||    
T  4232055 ttgtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaat 4232107  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 19964696 - 19964623
Alignment:
Q  94 tccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaa 167  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  19964696 tccaagcttgtggatcaagtgaccagtagtggttgacttcccagagtcaacatgaccaataaccacaatgttaa 19964623  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 16352207 - 16352298
Alignment:
Q  92 cctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttccttt 183  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||| |||||| ||||||  ||||||| ||||    
T  16352207 cctccaagcttgtagaacaaatgaccggcggtggttgacttcccagagttgacatgaccaataaccacaatgttaatatgaaccttttcttt 16352298  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 7528883 - 7528735
Alignment:
Q  5 ttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgt 104  Q
    |||||||| ||||| ||||| |||||||||| | |||| |||||||| ||||| |||||||||| ||| || ||   ||| | ||||||||| |||||||    
T  7528883 ttgtcaagaacccatgcatacttgaatgaacgcttgttcatctcagcagcttccttctcaaatctctcgatcacacgcttgtcaatacctcctagcttgt 7528784  T
Q  105 agatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaat 153  Q
    ||||||| |||||||  || ||||| || |||||||||||||| |||||    
T  7528783 agatcaagtgaccagttgttgttgattttccagagtcgacatgtccaat 7528735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 7519515 - 7519364
Alignment:
Q  2 agcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagct 101  Q
    ||||||||||| ||||| || || ||||| || | | |||| |||||||| ||||| ||||| |||| ||| || ||   ||| | ||||||||| ||||    
T  7519515 agcttgtcaagaacccatgcgtacttgaaagacctcttgttcatctcagcagcttccttctcgaatctctcgatcacacgcttgtcaatacctcctagct 7519416  T
Q  102 tgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaat 153  Q
    |||||||||| |||||||  || ||||| || |||||||||||||| |||||    
T  7519415 tgtagatcaagtgaccagttgttgttgattttccagagtcgacatgtccaat 7519364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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