View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2928_high_7 (Length: 227)
Name: NF2928_high_7
Description: NF2928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2928_high_7 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0267 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 3907006 - 3906786
Alignment:
| Q |
7 |
ctaagcgccaaaagatttggatgtctgattttgccaagtgaagcaacctcagcttcaaactccttatgccctttagtagtcttctccctcaatctcttca |
106 |
Q |
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| T |
3907006 |
ctaagcgccaaaagattcggatgtctgattttgccaagtgatgcaacctcagcttcaaactccttatgtcctttagtagtcttctccctcaatctcttca |
3906907 |
T |
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| Q |
107 |
cagcaacttgattaccatcttccaatgttgccttgtaagctgttccataagcagtttttcccattatctcagcagtagcacacaaaagatcatcagcagt |
206 |
Q |
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| T |
3906906 |
cagcaacttgattaccatcttccaatgttgccttgtaagctgttccataagctgttttgcccattatctcagcagttgcacacaaaagatcatcagcggt |
3906807 |
T |
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| Q |
207 |
gaacacaaatggtccatcaaa |
227 |
Q |
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| T |
3906806 |
gaacacaaatggtccatcaaa |
3906786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 15764 - 15676
Alignment:
| Q |
100 |
ctcttcacagcaacttgattaccatcttccaatgttgccttgtaagctgttccataagcagtttttcccattatctcagcagtagcaca |
188 |
Q |
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| T |
15764 |
ctcttcacagaaacttgattaccattttcctatgttgccttgtaagttgttccataagcactttttcccattatctcagcagttgcaca |
15676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 15811 - 15762
Alignment:
| Q |
7 |
ctaagcgccaaaagatttggatgtctgattttgccaagtgaagcaacctc |
56 |
Q |
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| T |
15811 |
ctaagagctaaaagatttggatgtctgattttaccaaggaaagcaacctc |
15762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 227
Target Start/End: Original strand, 36024590 - 36024731
Alignment:
| Q |
86 |
tcttctccctcaatctcttcacagcaacttgattaccatcttccaatgttgccttgtaagctgttccataagcagtttttcccattatctcagcagtagc |
185 |
Q |
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|||| |||||||||| ||||| ||| ||||| ||||||| || ||||||||||| || |||||||||| | | |||||||||||||| ||||| || |
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| T |
36024590 |
tcttttccctcaatcgtttcaccgcagcttgactaccatcctctaatgttgccttatacactgttccataggtgctctttcccattatctcggcagttgc |
36024689 |
T |
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| Q |
186 |
acacaaaagatcatcagcagtgaacacaaatggtccatcaaa |
227 |
Q |
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|||||| ||||||||||| || || ||| |||||||||||| |
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| T |
36024690 |
acacaagagatcatcagcggtaaaagcaagtggtccatcaaa |
36024731 |
T |
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