View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2928_low_5 (Length: 286)

Name: NF2928_low_5
Description: NF2928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2928_low_5
NF2928_low_5
[»] chr1 (4 HSPs)
chr1 (50-269)||(8102216-8102435)
chr1 (50-269)||(8103714-8103933)
chr1 (50-244)||(8099484-8099678)
chr1 (1-33)||(8099696-8099728)
[»] chr3 (3 HSPs)
chr3 (130-199)||(42957764-42957833)
chr3 (50-137)||(32278962-32279048)
chr3 (50-116)||(25045997-25046062)
[»] chr4 (5 HSPs)
chr4 (189-265)||(21261245-21261320)
chr4 (68-137)||(13779848-13779917)
chr4 (68-137)||(35033329-35033398)
chr4 (153-227)||(13779742-13779817)
chr4 (153-262)||(35033429-35033538)
[»] chr5 (1 HSPs)
chr5 (50-137)||(30085504-30085590)
[»] chr2 (2 HSPs)
chr2 (50-137)||(28198653-28198739)
chr2 (153-262)||(28198770-28198879)
[»] chr7 (1 HSPs)
chr7 (50-137)||(19626020-19626105)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 8102216 - 8102435
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcaccagaataaatat 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  8102216 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatataattattttgatatttttcataagtagcaccagaataaatat 8102315  T
Q  150 taatagcaccacaaattaaggtaagcacaaaactttttaaaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaac 249  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8102316 taatagcaccacaaattaagataagcacaaaactttttaaaattttgattcttcgtaatttgcaactagtgtattttcccttttgcagcttaaaccaaac 8102415  T
Q  250 aataataatatagaaggatt 269  Q
     |||||||||||||||||||    
T  8102416 gataataatatagaaggatt 8102435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 8103714 - 8103933
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcaccagaataaatat 149  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  8103714 accctttactttaaaagaatcactatcttgaattcataactcaattcaatcaatatatgattattttgatacttttcataagtagcaccagaataaatat 8103813  T
Q  150 taatagcaccacaaattaaggtaagcacaaaactttttaaaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaac 249  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  8103814 taatagcaccacaaattaagataagcacaaaactttttaaaattttgattcttggtaatttgcaactagtgtattttcccttttgcagcttaaaccaaac 8103913  T
Q  250 aataataatatagaaggatt 269  Q
    ||||||||||||||||||||    
T  8103914 aataataatatagaaggatt 8103933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 8099678 - 8099484
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcaccagaataaatat 149  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||    
T  8099678 accctttactttaaaagaatcactatattgaattcaacactcaattcaatcaatatgtgattattttgatatttttcataagtagcaccaaaataaatat 8099579  T
Q  150 taatagcaccacaaattaaggtaagcacaaaactttttaaaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaac 244  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8099578 taatagcaccataaattaagataagcacaaaactttttaaaattttggttcttcgtaatttgcaactagtgtattttcccttttgcagcttaaac 8099484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8099728 - 8099696
Alignment:
Q  1 tttagaaaatggacggaacaaaatgagttataa 33  Q
    |||||||||| ||||||||||||||||||||||    
T  8099728 tttagaaaatagacggaacaaaatgagttataa 8099696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 42957833 - 42957764
Alignment:
Q  130 agtagcaccagaataaatattaatagcaccacaaattaaggtaagcacaaaactttttaaaattttggtt 199  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||    
T  42957833 agtagcaccataataaacattaatagcaccacaaattaaggtaagaacaaaacatttttaaattttggtt 42957764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 32279048 - 32278962
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcac 137  Q
    ||||||||||| |||| | ||||||||||||||||  |||||||||||||||||| ||| ||||||| | | | ||||||| ||||||    
T  32279048 accctttacttaaaaaca-tcactatgttgaattctcaactcaattcaatcaataagtagttattttgacattattcataaatagcac 32278962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 25046062 - 25045997
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattatttt 116  Q
    ||||||||||| |||| | ||||||||||||||||  |||||||||||||||||| ||| |||||||    
T  25046062 accctttacttaaaaaca-tcactatgttgaattctcaactcaattcaatcaatacgtagttatttt 25045997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 21261245 - 21261320
Alignment:
Q  189 aaattttggttcttcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaag 265  Q
    ||||||||||||| | |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||    
T  21261245 aaattttggttctgcataatttgcaactagtgtatttt-cctttggcagattaaaccaaacaataataatatcgaag 21261320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 13779917 - 13779848
Alignment:
Q  68 atcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcac 137  Q
    |||||||||||||||||  |||||||||||||||||| ||| ||||||| | | | ||||||| ||||||    
T  13779917 atcactatgttgaattctcaactcaattcaatcaatacgtagttattttgacattattcataaatagcac 13779848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 35033329 - 35033398
Alignment:
Q  68 atcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcac 137  Q
    |||||||||||||||||  |||||||||||||||||| ||| ||||||| | | | ||||||| ||||||    
T  35033329 atcactatgttgaattctcaactcaattcaatcaatacgtagttattttgacattattcataaatagcac 35033398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 13779817 - 13779742
Alignment:
Q  153 tagcaccacaaattaaggtaagcacaaaactttttaaaattttggttct-tcctaatttgcaactagtgtattttc 227  Q
    ||||||||||||||||| |||| ||||||| |||| |||||| ||||||  | |||||||||||||  ||||||||    
T  13779817 tagcaccacaaattaagataagaacaaaacatttttaaatttcggttctggcataatttgcaactacagtattttc 13779742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 35033429 - 35033538
Alignment:
Q  153 tagcaccacaaattaaggtaagcacaaaactttttaaaattttggttct-tcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaa 251  Q
    ||||||||||||||||| |||| ||||||| |||| |||||| ||||||  | |||||||||||||  ||| ||||  |||  ||| |||||  ||||||    
T  35033429 tagcaccacaaattaagataagaacaaaacatttttaaatttcggttctgacataatttgcaactacagta-tttctatttgtcaggttaaataaaacaa 35033527  T
Q  252 taataatatag 262  Q
    |||||||||||    
T  35033528 taataatatag 35033538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 30085590 - 30085504
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcac 137  Q
    ||||||||||| |||| | ||||||||||||||||  |||||||||||||||||| ||| ||||||| | | | ||||||| ||||||    
T  30085590 accctttacttaaaaaca-tcactatgttgaattctcaactcaattcaatcaatacgtagttattttgacattattcataaatagcac 30085504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 28198653 - 28198739
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcac 137  Q
    ||||||||||| |||| | ||||||||||||||||  |||||||||||||||||| ||| ||||||| | | | ||||||| ||||||    
T  28198653 accctttacttaaaaaca-tcactatgttgaattctcaactcaattcaatcaatacgtagttattttgacattattcataaatagcac 28198739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 28198770 - 28198879
Alignment:
Q  153 tagcaccacaaattaaggtaagcacaaaactttttaaaattttggttct-tcctaatttgcaactagtgtattttcccttttgcagcttaaaccaaacaa 251  Q
    ||||||||||||||||| |||| ||||||| |||| |||||| ||||||  | |||||||||||||   || ||||| |||  ||| |||||  ||||||    
T  28198770 tagcaccacaaattaagataagaacaaaacatttttaaatttcggttctggcataatttgcaactacaata-tttccatttgtcaggttaaataaaacaa 28198868  T
Q  252 taataatatag 262  Q
    |||||||||||    
T  28198869 taataatatag 28198879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 19626105 - 19626020
Alignment:
Q  50 accctttactttaaaagaatcactatgttgaattcataactcaattcaatcaatatgtaattattttaatacttttcataagtagcac 137  Q
    ||||||||||| |||| | ||||| ||||||||||  |||||||||||||||||||||| ||||||| | | | ||||||| ||||||    
T  19626105 accctttacttaaaaaca-tcact-tgttgaattctcaactcaattcaatcaatatgtagttattttgacattattcataaatagcac 19626020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University