View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2928_low_8 (Length: 246)
Name: NF2928_low_8
Description: NF2928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2928_low_8 |
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| [»] scaffold0267 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3906801 - 3906561
Alignment:
| Q |
1 |
caaatggtccatcaaagtgaactagctttccaccagcttcacctcctgatacaacatcagcaccaccagctgaaccacctttctccacactcctagcaga |
100 |
Q |
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| T |
3906801 |
caaatggtccatcaaagtgaaccagcttgccaccggcttcacctcccgatacagcttcaccaccaccagctgaaccacctttctccacactcctagcaga |
3906702 |
T |
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| Q |
101 |
agcagcagctttagcagctttactactctttctgcttgaagaagctcttttcctgaccaaacaagagagcaaaaagcagcaaagtaatagaaaaatcaac |
200 |
Q |
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| T |
3906701 |
agcagcagctttagcagctttactactctttctgcttgaagaagctcttttcctgactaaacaacaaagcaaaaagcagcaaagtaatagcaaaattaac |
3906602 |
T |
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| Q |
201 |
aaaagtacaccagctactatgaggataatgccctctgtgct |
241 |
Q |
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| T |
3906601 |
aaaagaacaccagctactatgaggataatgtcctttgtgct |
3906561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 15603 - 15412
Alignment:
| Q |
45 |
cctgatacaacatcagcaccaccagctgaaccacctttctccacactcctagcagaagcagcagctttagcagctttactactctttctgcttgaagaag |
144 |
Q |
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| T |
15603 |
cctgacacaacttcaccaccaccagctgaaccacctttctccacactcctagcagaagc---------agacgctttgctactatttccgcttgaagaag |
15513 |
T |
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| Q |
145 |
ctcttttcctgaccaaacaagagagcaaaaagc----agcaaagtaatagaaaaatcaacaaaagtacaccagctactatgaggataatgccctctgtgc |
240 |
Q |
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| T |
15512 |
ctcatttcctgaccaaacaacaaagcataaagcaacaaacaaagtaataagaaaatcaataaaagaacacaagatactatgaggataatgtcctttgtgc |
15413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 15658 - 15620
Alignment:
| Q |
8 |
tccatcaaagtgaactagctttccaccagcttcacctcc |
46 |
Q |
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| T |
15658 |
tccatcaaagtgaactagttttccaccagcttcacctcc |
15620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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