View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2929_high_1 (Length: 592)
Name: NF2929_high_1
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2929_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 20 - 584
Target Start/End: Original strand, 36322449 - 36323014
Alignment:
| Q |
20 |
gattattgggattattaattgcaattatttttgctaataattgtggaatttgggtacgtgtgaggtgcaggggcgtttgcgcttgagaacatggcaactt |
119 |
Q |
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| T |
36322449 |
gattattgggattattaattgcaattatttttgctaataattgtggaatttgggtacgtgtgaggtgcaggggcgtttgcgcttgagaacatggcaactt |
36322548 |
T |
|
| Q |
120 |
ttgcactagcagtgaactttgtgtcatacttcgttggtttcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgtta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322549 |
ttgcactagcagtgaactttgtgtcatacttcgttggtttcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgtta |
36322648 |
T |
|
| Q |
220 |
catgctctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322649 |
catgctctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcata |
36322748 |
T |
|
| Q |
320 |
attatattatgagcaatgttatttatcccgacacatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaa |
419 |
Q |
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| T |
36322749 |
attatattatgagcaatgctatttatcccgatacatgttgtcccaaaattgccagcgaaaatctatttttcaatcaaatttcatgcttcccacaaatcaa |
36322848 |
T |
|
| Q |
420 |
gggaggtggtggggcataatttagggagatatcatgattattcggtgcatgttcacttgtgaaattattgggacaata-tttgtcgtgatacatagcaat |
518 |
Q |
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| T |
36322849 |
gggaggtggtggggcataatttagggagatatcatgattattcggtgcatgttcacttgtgaaactattgggacaatattttgtcgtgatacatagcaat |
36322948 |
T |
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| Q |
519 |
ttccttatattatatagagcatgtgacaaacgtttgacaccattatattggtggtggttgatgatg |
584 |
Q |
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| T |
36322949 |
ttccttatattatatagagcatgtgacaaatgtttgacaccattatattggtggtggttgatgatg |
36323014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 83 - 315
Target Start/End: Original strand, 36329310 - 36329542
Alignment:
| Q |
83 |
ggtgcaggggcgtttgcgcttgagaacatggcaacttttgcactagcagtgaactttgtgtcatacttcgttggtttcatgcattatgaactagcagatg |
182 |
Q |
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| T |
36329310 |
ggtgcaggggcgtttgcttttgagagcatggcaactctagcactagcagtgaactttgtgtcatacttcattgggattatgcattatgaactagcagatg |
36329409 |
T |
|
| Q |
183 |
cagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatggattggaagacacaaatccgttct |
282 |
Q |
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| T |
36329410 |
cagctaacatggtaaccaatttcatgggagttagtaacttgctctccattgtcgtcgccgttcttgctgattcattcattggaagatataaaaccgttct |
36329509 |
T |
|
| Q |
283 |
tatttctggctgctttgagtttttggtaagttt |
315 |
Q |
| |
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||||||||||| |||||||| |||||||||||| |
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| T |
36329510 |
tatttctggcttctttgagtgtttggtaagttt |
36329542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 159 - 312
Target Start/End: Original strand, 5458310 - 5458463
Alignment:
| Q |
159 |
tcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatg |
258 |
Q |
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||||||||||| |||||| |||||| ||||||||| | ||||||| ||||| || ||||||| ||||| ||| | || || | ||||||||||||| |
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| T |
5458310 |
tcatgcattatcaactagaagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctattttggtggctatcgttgctgatacatg |
5458409 |
T |
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| Q |
259 |
gattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaag |
312 |
Q |
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|||||| ||| ||||||| ||| | ||||||||| ||| |||||||||||||| |
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| T |
5458410 |
gattggtagatacaaatctgttttattttctggcttcttcgagtttttggtaag |
5458463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 17438909 - 17438840
Alignment:
| Q |
373 |
agcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
442 |
Q |
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| T |
17438909 |
agcgataatcaattgtccaattaaatttctttctggccacaaatcaagggaggtggtggggcataattta |
17438840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 11168178 - 11168124
Alignment:
| Q |
388 |
tccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
442 |
Q |
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|||||||||||||| | || ||||||||||||||||||||||||||||| |||| |
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| T |
11168178 |
tccaatcaaatttctttctgaccacaaatcaagggaggtggtggggcatatttta |
11168124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 24606063 - 24605997
Alignment:
| Q |
334 |
aatgttatttatcccgacacatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttc |
401 |
Q |
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| T |
24606063 |
aatgctatttatcccaatacatgttgtcccaaa-ttgctagtgaaaatccattttctaatcaaatttc |
24605997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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