View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2929_high_4 (Length: 310)

Name: NF2929_high_4
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2929_high_4
NF2929_high_4
[»] chr8 (3 HSPs)
chr8 (221-299)||(18106893-18106971)
chr8 (149-227)||(18082610-18082688)
chr8 (5-127)||(18082430-18082552)
[»] chr4 (2 HSPs)
chr4 (177-227)||(37875737-37875787)
chr4 (243-299)||(37876249-37876305)
[»] chr2 (2 HSPs)
chr2 (174-227)||(23895894-23895947)
chr2 (243-299)||(23895376-23895432)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 18106893 - 18106971
Alignment:
Q  221 actccattataggtttcatttcggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcat 299  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  18106893 actcaattataggtttcatttcggtctgtgtgttcctttgcacaccggcattataccttttctatgtgggagtcttcat 18106971  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 18082610 - 18082688
Alignment:
Q  149 ttatggagttatttagaaactgtagttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat 227  Q
    ||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||    
T  18082610 ttatgaagttgtttagaaactgtagttttgtatgtgtggcagatgaacatgtgtctaattccagagttctatactccat 18082688  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 18082430 - 18082552
Alignment:
Q  5 ctaggctggttagacttaagtatccaaagagttcatgaaattgaaggtaatggagagttattatgtcagcacatggtaattttcaaggaaaaatttcttc 104  Q
    ||||||||||| || ||||||| |||||||||| | | ||||| || ||| ||||||| ||| |||  |||||||||||| |  ||||||||   |||||    
T  18082430 ctaggctggtttgatttaagtacccaaagagttgaggtaattggagttaacggagagtcattttgttcgcacatggtaatctataaggaaaatcctcttc 18082529  T
Q  105 cttttcctaggaatgaataattt 127  Q
    ||||||| |||||||||||||||    
T  18082530 cttttccgaggaatgaataattt 18082552  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 37875737 - 37875787
Alignment:
Q  177 tgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat 227  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37875737 tgtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat 37875787  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 37876249 - 37876305
Alignment:
Q  243 ggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcat 299  Q
    |||||||||||||||||||| |||||||||||||||| || || |||||||||||||    
T  37876249 ggtctgtgtgttcctttgcaaaccggcattataccttctccatgtgggggtcttcat 37876305  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 23895947 - 23895894
Alignment:
Q  174 ttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat 227  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23895947 tttngtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat 23895894  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 23895432 - 23895376
Alignment:
Q  243 ggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcat 299  Q
    |||||||||||||||||||| |||||||||||||||| || || |||||||||||||    
T  23895432 ggtctgtgtgttcctttgcaaaccggcattataccttctccatgtgggggtcttcat 23895376  T

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