View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2929_high_7 (Length: 252)

Name: NF2929_high_7
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2929_high_7
NF2929_high_7
[»] chr1 (9 HSPs)
chr1 (1-229)||(5031699-5031921)
chr1 (38-120)||(17983258-17983340)
chr1 (40-119)||(41985251-41985330)
chr1 (38-111)||(20607548-20607621)
chr1 (40-118)||(3820299-3820377)
chr1 (39-111)||(5757798-5757870)
chr1 (38-111)||(20610819-20610892)
chr1 (43-111)||(6073242-6073310)
chr1 (40-112)||(41987968-41988040)
[»] chr2 (4 HSPs)
chr2 (38-119)||(27282655-27282736)
chr2 (39-120)||(36048279-36048360)
chr2 (39-117)||(36047048-36047126)
chr2 (39-111)||(44206819-44206891)
[»] chr8 (6 HSPs)
chr8 (38-119)||(43731576-43731657)
chr8 (38-111)||(43748330-43748403)
chr8 (39-119)||(18364532-18364612)
chr8 (40-119)||(27547174-27547253)
chr8 (38-112)||(9944022-9944096)
chr8 (39-112)||(35929245-35929318)
[»] chr3 (10 HSPs)
chr3 (39-120)||(27481699-27481780)
chr3 (38-118)||(31604695-31604775)
chr3 (39-121)||(48394373-48394455)
chr3 (38-119)||(41665423-41665504)
chr3 (40-127)||(52044101-52044187)
chr3 (38-112)||(39623992-39624066)
chr3 (38-117)||(47667102-47667181)
chr3 (38-111)||(39918624-39918697)
chr3 (38-111)||(48402436-48402509)
chr3 (55-102)||(48413993-48414040)
[»] chr7 (7 HSPs)
chr7 (38-122)||(31516559-31516643)
chr7 (32-111)||(28040454-28040533)
chr7 (38-111)||(33171122-33171195)
chr7 (38-111)||(44206096-44206169)
chr7 (39-119)||(39796744-39796824)
chr7 (38-112)||(23260674-23260748)
chr7 (40-111)||(38538910-38538981)
[»] chr5 (4 HSPs)
chr5 (39-111)||(32684983-32685055)
chr5 (39-112)||(8880743-8880816)
chr5 (38-111)||(20190346-20190419)
chr5 (38-119)||(20200366-20200447)
[»] chr4 (1 HSPs)
chr4 (39-111)||(24267487-24267559)
[»] scaffold0012 (1 HSPs)
scaffold0012 (38-101)||(184931-184994)
[»] chr6 (1 HSPs)
chr6 (57-89)||(30899737-30899769)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5031699 - 5031921
Alignment:
Q  1 atgaatatttaaactttatacgaccaagtggacatagaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccc 100  Q
    |||||||||||||  |  ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031699 atgaatatttaaatatattacgaccaagaagacacagaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccc 5031798  T
Q  101 cggcagcggcgtctttt--ttattcattttgacaataattaacattaattatgcagttttgtctttcgtgcnnnnnnngttcgtgaaaacctttctcgtt 198  Q
    |||||||||||||||||  || ||||||    || |  || ||| ||||||||||||||||||||||| ||       |||||||||||||||  |||||    
T  5031799 cggcagcggcgtctttttgtttttcatt----catt--ttgacaataattatgcagttttgtctttcgggctttttttgttcgtgaaaacctt--tcgtt 5031890  T
Q  199 cttttcctacaaaatcttgaaaggaaaaatg 229  Q
    |||||||||||||||||||||||||||||||    
T  5031891 cttttcctacaaaatcttgaaaggaaaaatg 5031921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 17983258 - 17983340
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17983258 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtttttttta 17983340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 41985251 - 41985330
Alignment:
Q  40 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41985251 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcaatccccggcagcggcgtctttttt 41985330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 20607548 - 20607621
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20607548 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 20607621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 3820377 - 3820299
Alignment:
Q  40 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtcttttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  3820377 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgttttttt 3820299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 5757798 - 5757870
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5757798 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 5757870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 20610819 - 20610892
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  20610819 aagttgttgtagtatagtggtaagtattcccgcttgtcacccgggtgacccgggttcgatccccggcagcggcg 20610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 6073310 - 6073242
Alignment:
Q  43 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  6073310 gttgtagtatagtggtaagtattcccacctgtcacgcgggtgacccgggttcgatccccggcaacggcg 6073242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 41987968 - 41988040
Alignment:
Q  40 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 112  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||    
T  41987968 gtcgttgtagtatagtggtaagtattcccgcctgtcacccgggtgacccaggtttgatccccggcagcggcgt 41988040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 27282736 - 27282655
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27282736 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 27282655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 36048279 - 36048360
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36048279 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtatttttta 36048360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 36047048 - 36047126
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36047048 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtatttt 36047126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 44206819 - 44206891
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44206819 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccggattcgatccccggcagcggcg 44206891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 43731657 - 43731576
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43731657 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtttttttt 43731576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 43748403 - 43748330
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43748403 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 43748330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 18364532 - 18364612
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  18364532 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtttttttt 18364612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 27547174 - 27547253
Alignment:
Q  40 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  27547174 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtttttttt 27547253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 9944096 - 9944022
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9944096 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 9944022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 35929245 - 35929318
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35929245 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 35929318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 27481780 - 27481699
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27481780 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgatccgggttcgatccccggcagcggcgtctttttta 27481699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 31604695 - 31604775
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtcttttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31604695 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgttttttt 31604775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 48394455 - 48394373
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtcttttttat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  48394455 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgttttttttat 48394373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 41665504 - 41665423
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  41665504 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtttttttt 41665423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 52044101 - 52044187
Alignment:
Q  40 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtcttttttattcattt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  52044101 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt-ttttttatttattt 52044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 39624066 - 39623992
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39624066 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 39623992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 47667181 - 47667102
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||    
T  47667181 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcaagtgacccgggttcgatccccggcaacggcgtttttt 47667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 39918697 - 39918624
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  39918697 aagttgttgtagtatagtggtaagtattcccgcctgtcacacgggtgacccgggttcgatccccggcaacggcg 39918624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 48402509 - 48402436
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||| |||| |||||    
T  48402509 aagttgttgtagtatagtggtaagtattcccgtctgtcacgcgggtgacctgagtttgatccctggcaacggcg 48402436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 48414040 - 48413993
Alignment:
Q  55 tggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccg 102  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  48414040 tggtaagtattcccgcttgtcacgcgggtgactcgggtttgatccccg 48413993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 31516559 - 31516643
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtcttttttatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  31516559 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcctcggcagcggcgttttttttatt 31516643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 28040533 - 28040454
Alignment:
Q  32 acatagaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28040533 acattgaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 28040454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 33171122 - 33171195
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171122 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 33171195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 44206096 - 44206169
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44206096 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 44206169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 39796824 - 39796744
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  39796824 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtatttttt 39796744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 23260674 - 23260748
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23260674 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 23260748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 38538910 - 38538981
Alignment:
Q  40 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38538910 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 38538981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 32684983 - 32685055
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32684983 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 32685055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 8880743 - 8880816
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8880743 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 8880816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 20190419 - 20190346
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20190419 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgtgggtgacccgggttcgatccccggcagcggcg 20190346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 20200447 - 20200366
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtctttttt 119  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  20200447 aagtcgttgtagtatagtggtaagtattcctgcctgtcatgcgggtgacccgggtttgatccccgacagcggcgtgtttttt 20200366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 24267559 - 24267487
Alignment:
Q  39 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||| |||||    
T  24267559 agtcgttgtagtatagtggtaagtatttccgcctgtcacgcggacgacccgggttcgatccccggcaacggcg 24267487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 184931 - 184994
Alignment:
Q  38 aagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcccc 101  Q
    |||| ||||||||||||||||||||||| ||  |||||| |||||||| |||||||| ||||||    
T  184931 aagttgttgtagtatagtggtaagtatttccatctgtcatgcgggtgatccgggttcaatcccc 184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 30899737 - 30899769
Alignment:
Q  57 gtaagtattcccgcctgtcacgcgggtgacccg 89  Q
    |||||||||||||||||||||||||||||||||    
T  30899737 gtaagtattcccgcctgtcacgcgggtgacccg 30899769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University