View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2929_low_10 (Length: 245)

Name: NF2929_low_10
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2929_low_10
NF2929_low_10
[»] chr7 (10 HSPs)
chr7 (1-229)||(23372148-23372377)
chr7 (1-42)||(3246541-3246582)
chr7 (1-42)||(17305445-17305486)
chr7 (1-42)||(32814826-32814867)
chr7 (1-42)||(37410536-37410577)
chr7 (1-41)||(41012636-41012676)
chr7 (2-40)||(43712369-43712407)
chr7 (1-42)||(1649151-1649192)
chr7 (1-42)||(8147241-8147282)
chr7 (1-42)||(11808037-11808078)
[»] chr3 (15 HSPs)
chr3 (1-42)||(3973301-3973342)
chr3 (1-42)||(3996534-3996575)
chr3 (1-41)||(4010073-4010113)
chr3 (1-42)||(16874245-16874286)
chr3 (1-42)||(30745786-30745827)
chr3 (1-41)||(3993762-3993802)
chr3 (1-40)||(23305747-23305786)
chr3 (3-42)||(31680731-31680770)
chr3 (1-42)||(3461779-3461820)
chr3 (1-42)||(19137618-19137659)
chr3 (1-42)||(40160734-40160775)
chr3 (1-42)||(44591999-44592040)
chr3 (3-44)||(50484084-50484125)
chr3 (1-41)||(12143462-12143502)
chr3 (2-42)||(38507647-38507687)
[»] chr8 (16 HSPs)
chr8 (1-41)||(26657856-26657896)
chr8 (1-47)||(28979020-28979066)
chr8 (1-42)||(29937209-29937250)
chr8 (1-42)||(216202-216243)
chr8 (1-42)||(220417-220458)
chr8 (1-42)||(689572-689613)
chr8 (1-42)||(692762-692803)
chr8 (1-42)||(696971-697012)
chr8 (1-42)||(729825-729866)
chr8 (1-42)||(734040-734081)
chr8 (1-42)||(853720-853761)
chr8 (1-42)||(857936-857977)
chr8 (2-35)||(36593200-36593233)
chr8 (1-42)||(39432383-39432424)
chr8 (1-41)||(14011093-14011133)
chr8 (2-42)||(32940370-32940410)
[»] chr5 (9 HSPs)
chr5 (1-48)||(35813297-35813344)
chr5 (1-42)||(11246549-11246590)
chr5 (2-42)||(19648495-19648535)
chr5 (1-40)||(38040267-38040306)
chr5 (1-42)||(7147074-7147115)
chr5 (1-42)||(25660911-25660952)
chr5 (2-42)||(3535992-3536032)
chr5 (2-38)||(17178278-17178314)
chr5 (1-41)||(41405143-41405183)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-42)||(4519-4560)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-42)||(4539-4580)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-42)||(34088-34129)
[»] chr6 (8 HSPs)
chr6 (1-42)||(9443518-9443559)
chr6 (1-42)||(34524874-34524915)
chr6 (1-40)||(8309165-8309204)
chr6 (1-42)||(8175995-8176036)
chr6 (1-42)||(9031765-9031806)
chr6 (1-42)||(14277128-14277169)
chr6 (1-42)||(26669714-26669755)
chr6 (2-42)||(9422832-9422872)
[»] chr4 (12 HSPs)
chr4 (1-42)||(27921895-27921936)
chr4 (1-42)||(49039500-49039541)
chr4 (1-41)||(20610739-20610779)
chr4 (1-42)||(4419741-4419782)
chr4 (1-42)||(20166315-20166356)
chr4 (1-42)||(38657539-38657580)
chr4 (1-42)||(39293520-39293561)
chr4 (1-42)||(41492553-41492594)
chr4 (1-42)||(43049988-43050029)
chr4 (1-41)||(56915-56955)
chr4 (1-41)||(36045830-36045870)
chr4 (1-41)||(42758218-42758258)
[»] chr2 (10 HSPs)
chr2 (1-42)||(14307749-14307790)
chr2 (1-40)||(36386168-36386207)
chr2 (1-42)||(11133074-11133116)
chr2 (1-42)||(6282234-6282275)
chr2 (1-38)||(6496442-6496479)
chr2 (1-42)||(36277757-36277798)
chr2 (1-42)||(37065489-37065530)
chr2 (1-42)||(44487822-44487863)
chr2 (2-42)||(8080726-8080766)
chr2 (1-41)||(18065254-18065294)
[»] chr1 (13 HSPs)
chr1 (1-42)||(7906381-7906422)
chr1 (1-42)||(9768864-9768905)
chr1 (1-42)||(18003815-18003856)
chr1 (1-41)||(1721140-1721180)
chr1 (1-40)||(33176158-33176197)
chr1 (1-42)||(5862127-5862168)
chr1 (1-42)||(7015742-7015783)
chr1 (1-42)||(12553192-12553233)
chr1 (1-42)||(18179327-18179368)
chr1 (1-38)||(19536720-19536757)
chr1 (2-39)||(23750152-23750189)
chr1 (1-42)||(42908770-42908811)
chr1 (1-42)||(52961137-52961178)
[»] scaffold0118 (1 HSPs)
scaffold0118 (6-42)||(37388-37424)
[»] scaffold0308 (1 HSPs)
scaffold0308 (1-42)||(7074-7116)
[»] scaffold1808 (1 HSPs)
scaffold1808 (1-42)||(888-929)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-42)||(1038-1079)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23372148 - 23372377
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacgtggattnnnnnnntattgtgttttgatgggaannnnnnnnncc-tcatcaaggtaacg 99  Q
    ||||||||||| ||||||||||||||||||||   |||||||||||||       |||| ||||||||||||||          | ||||||||||||||    
T  23372148 catataacaatacatgtccctaacaactgagcatagctcacgtggattaaaaaaatattatgttttgatgggaattttttttttcatcatcaaggtaacg 23372247  T
Q  100 ggccacataagtatctcaagttaaggaggggttaatgagggaaagttccacctgacgtaacaataatgataaacccacacaccataatattcttcttgct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23372248 ggccacataagtatctcaagttaaggaggggttaatgagggaaagttccatctgacgtaacaataatgataaacccacacaccataatattcttcttgct 23372347  T
Q  200 tatcaatgatgataaaaccaacatggtatg 229  Q
    ||||||||||||||||||||||||||||||    
T  23372348 tatcaatgatgataaaaccaacatggtatg 23372377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3246541 - 3246582
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  3246541 catataacaatgcatgtccctgtcaactgagctatgctcacg 3246582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17305445 - 17305486
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  17305445 catataacaatgcatgtccctgccaactgagctatgctcacg 17305486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32814867 - 32814826
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  32814867 catataataatgcatgtccctaccaactgagctatgctcacg 32814826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37410536 - 37410577
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  37410536 catataacaatgcatgtccttaccaactgagctatgctcacg 37410577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41012636 - 41012676
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  41012636 catataacaatgcatgtccctaccaattgagctatgctcac 41012676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 43712369 - 43712407
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctca 40  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  43712369 atataacaatgcatgtccctaccaactgagttatgctca 43712407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1649192 - 1649151
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||| |||||||||| |||||| |||||||||||||||||||    
T  1649192 cataaaacaatgcatatccctaccaactgagctatgctcacg 1649151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8147241 - 8147282
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  ||| |||||||||||||||    
T  8147241 catataacaatgcatgtccctgccaattgagctatgctcacg 8147282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11808078 - 11808037
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||| ||| ||||||| |||||||    
T  11808078 catataacaatgcatgtccctaccaattgagctaagctcacg 11808037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3973342 - 3973301
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3973342 catataacaatgcatgtccctaccaactgagctatgctcacg 3973301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3996534 - 3996575
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  3996534 catataacaatgcatgtccctaccaactgagctatgctcacg 3996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4010073 - 4010113
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4010073 catataacaatgcatgtccctaccaactgagctatgctcac 4010113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16874245 - 16874286
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  16874245 catataacaatgcatgtccctgccaactgagctatgctcacg 16874286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30745786 - 30745827
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  30745786 catataacaatgcatgtccctgccaactgagctatgctcacg 30745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3993762 - 3993802
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  3993762 catataacaatgcatgtccctctcaactgagctatgctcac 3993802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23305786 - 23305747
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctca 40  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  23305786 catataacaatgcatgtccctaccaactgagttatgctca 23305747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 31680770 - 31680731
Alignment:
Q  3 tataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  31680770 tataacaatgcatgtccctacaaactgagctatgctcacg 31680731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3461779 - 3461820
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  3461779 catataacaatgcatgtccctgtcaactgagttatgctcacg 3461820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19137659 - 19137618
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  19137659 catataacaatgcatgttcctgccaactgagctatgctcacg 19137618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40160775 - 40160734
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  ||| |||||||||||||||    
T  40160775 catataacaatgcatgtccctgccaattgagctatgctcacg 40160734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44592040 - 44591999
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||| |||| ||||||||||| |||||||    
T  44592040 catataacaatgcatgttcctaccaactgagctaagctcacg 44591999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 50484084 - 50484125
Alignment:
Q  3 tataacaatgcatgtccctaacaactgagctatgctcacgtg 44  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  50484084 tataacaatgcatgtctctaacaaccgagttatgctcacgtg 50484125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12143462 - 12143502
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  12143462 catataacaatgcatgtccctgccaactgagctatgttcac 12143502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 38507687 - 38507647
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||| |||||||||||||  |||||||||||||||||||    
T  38507687 atataataatgcatgtccctgccaactgagctatgctcacg 38507647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26657896 - 26657856
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  26657896 catataacaatgcatgtccctaccaactgagctatgctcac 26657856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28979066 - 28979020
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacgtggat 47  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  28979066 catataacaatgcatgtccctatcaactgaactatgctcacggggat 28979020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29937250 - 29937209
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  29937250 catataacaatacatgtccctaccaactgagctatgctcacg 29937209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 216202 - 216243
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  216202 catataacaatgtatgtccctgccaactgagctatgctcacg 216243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 220417 - 220458
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||| |||||||||||  |||||||||||||||||||    
T  220417 catataacattgcatgtccctgccaactgagctatgctcacg 220458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 689572 - 689613
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||| |||||||||||  |||||||||||||||||||    
T  689572 catataacattgcatgtccctgccaactgagctatgctcacg 689613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 692762 - 692803
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  692762 catataacaatgtatgtccctgccaactgagctatgctcacg 692803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 696971 - 697012
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  696971 catataacaatgtatgtccctgccaactgagctatgctcacg 697012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 729825 - 729866
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  729825 catataacaatgtatgtccctgccaactgagctatgctcacg 729866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 734040 - 734081
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||| |||||||||||  |||||||||||||||||||    
T  734040 catataacattgcatgtccctgccaactgagctatgctcacg 734081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 853720 - 853761
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  853720 catataacaatgtatgtccctgccaactgagctatgctcacg 853761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 857936 - 857977
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||| |||||||||||  |||||||||||||||||||    
T  857936 catataacattgcatgtccctgccaactgagctatgctcacg 857977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 36593233 - 36593200
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctat 35  Q
    ||||||||||||||||||||| ||||||||||||    
T  36593233 atataacaatgcatgtccctaccaactgagctat 36593200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39432383 - 39432424
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||| |||||||||||  |||||||||||||||||||    
T  39432383 catataacattgcatgtccctgccaactgagctatgctcacg 39432424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14011093 - 14011133
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||  ||||||| ||||||||||    
T  14011093 catataacaatgcatgtccctgccaactgaactatgctcac 14011133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 32940370 - 32940410
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||||  |||||||||||| ||||||    
T  32940370 atataacaatgcatgtccctgtcaactgagctatactcacg 32940410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35813297 - 35813344
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacgtggatt 48  Q
    |||||||||||||||||||||  ||||||||||||||||||| |||||    
T  35813297 catataacaatgcatgtccctgtcaactgagctatgctcacggggatt 35813344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11246549 - 11246590
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  11246549 catataacaatgcatgtccctgccaactgagctatgctcacg 11246590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 19648535 - 19648495
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  19648535 atataacaatgcatttccctatcaactgagctatgctcacg 19648495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38040306 - 38040267
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctca 40  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  38040306 catataacaatgcatgtccctgccaactgagctatgctca 38040267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7147074 - 7147115
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  7147074 catataataatgcatgtccttaccaactgagctatgctcacg 7147115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25660952 - 25660911
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||| |||||  |||||||||||||||||||    
T  25660952 catataacaatgcatatccctgccaactgagctatgctcacg 25660911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 3535992 - 3536032
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||||  ||||||| |||||||||||    
T  3535992 atataacaatgcatgtccctgccaactgaactatgctcacg 3536032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 17178278 - 17178314
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgct 38  Q
    ||||||||||||||||||||  |||||||||||||||    
T  17178278 atataacaatgcatgtccctgtcaactgagctatgct 17178314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41405143 - 41405183
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||  ||||||| ||||||||||    
T  41405143 catataacaatgcatgtccctgtcaactgaactatgctcac 41405183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4560 - 4519
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  4560 catataacaatgcatgtccctgccaactgagctatgctcacg 4519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4580 - 4539
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  4580 catataacaatgcatgtccctgccaactgagctatgctcacg 4539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34088 - 34129
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  34088 catataacaatgcatgtccctgccaactgagctatgctcacg 34129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9443518 - 9443559
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  9443518 catataacaatgcatgtccgtatcaactgagctatgctcacg 9443559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34524915 - 34524874
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  34524915 catataacaatgcatgtccctgccaactgagctatgctcacg 34524874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8309204 - 8309165
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctca 40  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  8309204 catataacaatgcatgtccctgccaactgagctatgctca 8309165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8176036 - 8175995
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  8176036 catataacaatgcatgtctctgtcaactgagctatgctcacg 8175995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9031806 - 9031765
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  ||||||||||||| |||||    
T  9031806 catataacaatgcatgtccctgccaactgagctatgttcacg 9031765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14277169 - 14277128
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||| |||||||| |||||| |||||||||||||    
T  14277169 catataacaatgtatgtccctgacaactaagctatgctcacg 14277128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26669714 - 26669755
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||  ||||||||||||| |||||||||||||||||||    
T  26669714 catataattatgcatgtccctaccaactgagctatgctcacg 26669755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 9422872 - 9422832
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||||  |||||||| ||||||||||    
T  9422872 atataacaatgcatgtccctgccaactgagttatgctcacg 9422832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27921936 - 27921895
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  27921936 catataataatgcatgtccctaccaactgagctatgctcacg 27921895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49039500 - 49039541
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  49039500 catataacaatgcatgtccctgccaactgagctatgctcacg 49039541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20610779 - 20610739
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  20610779 catataacaatgcatgtccctgccaactgagctatgctcac 20610739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4419741 - 4419782
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||| || ||||||||| ||||||||||    
T  4419741 catataacaatgcatgtctctgacaactgagttatgctcacg 4419782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20166356 - 20166315
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  ||||||||||| |||||||    
T  20166356 catataacaatgcatgtccctgccaactgagctacgctcacg 20166315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38657580 - 38657539
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  ||||||||| |||||||||    
T  38657580 catataacaatgcatgtccctgccaactgagccatgctcacg 38657539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39293561 - 39293520
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||  ||||||||||||| |||||||||||||||||||    
T  39293561 catataattatgcatgtccctaccaactgagctatgctcacg 39293520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41492553 - 41492594
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||| |||||||||||||  |||||||||||||||||||    
T  41492553 catataataatgcatgtccctgccaactgagctatgctcacg 41492594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43049988 - 43050029
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  43049988 catataacaatgcatgttcctgtcaactgagctatgctcacg 43050029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 56915 - 56955
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||  |||||||| |||||||||    
T  56915 catataacaatgcatgtccctgccaactgagttatgctcac 56955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36045870 - 36045830
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||||||||  ||| ||||||||||||||    
T  36045870 catataacaatgcatgtccctgtcaattgagctatgctcac 36045830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42758218 - 42758258
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    ||||||| ||||||||||||||  |||||||||||||||||    
T  42758218 catataataatgcatgtccctacaaactgagctatgctcac 42758258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14307749 - 14307790
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  14307749 catataacaatgcatgtccctaccaactgagccatgctcacg 14307790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36386168 - 36386207
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctca 40  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  36386168 catataacaatgcatatccctaccaactgagctatgctca 36386207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11133116 - 11133074
Alignment:
Q  1 catataacaatgcat-gtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  11133116 catataacaatgcattgtccctaccaactgagctatgctcacg 11133074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6282275 - 6282234
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||    
T  6282275 catataataatgcgtgtccctaacaactgagctatactcacg 6282234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6496479 - 6496442
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgct 38  Q
    |||||||||||||||||||||  |||||||||||||||    
T  6496479 catataacaatgcatgtcccttccaactgagctatgct 6496442  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36277757 - 36277798
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  36277757 catataacaatgcatgtcactgccaactgagctatgctcacg 36277798  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37065489 - 37065530
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||| || |||| ||||||||||||||    
T  37065489 catataacaatgcatgtccataccaacagagctatgctcacg 37065530  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44487822 - 44487863
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  44487822 catataataatgcatgtccctatcaactgagctatactcacg 44487863  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 8080726 - 8080766
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  8080726 atataataatgcatgtccctaccaattgagctatgctcacg 8080766  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18065294 - 18065254
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  18065294 catataacaatgcatgcctctaccaactgagctatgctcac 18065254  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7906381 - 7906422
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  7906381 catataacaatgcatgtccctaccaactgaactatgctcacg 7906422  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9768864 - 9768905
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  9768864 catataacaatgcatgtccctgccaactgagctatgctcacg 9768905  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18003856 - 18003815
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  18003856 catataacaatgcatgtccctgccaactgagctatgctcacg 18003815  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1721180 - 1721140
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcac 41  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  1721180 catataacaatgcatgttcctaccaactgagctatgctcac 1721140  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33176158 - 33176197
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctca 40  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  33176158 catataacaatgcatatccctaccaactgagctatgctca 33176197  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5862168 - 5862127
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  ||||||||||||| |||||    
T  5862168 catataacaatgcatgtccctgccaactgagctatgttcacg 5862127  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7015742 - 7015783
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  7015742 catataacaatgcatgtcccagccaactgagctatgctcacg 7015783  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12553233 - 12553192
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||| |||| |||||||||| ||||||||    
T  12553233 catataacaatgcatgttcctaccaactgagctgtgctcacg 12553192  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18179368 - 18179327
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  18179368 catataacaatgcatgtccctgccaactgagttatgctcacg 18179327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19536757 - 19536720
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgct 38  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  19536757 catatagcaatgcatgtccctaccaactgagctatgct 19536720  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 23750189 - 23750152
Alignment:
Q  2 atataacaatgcatgtccctaacaactgagctatgctc 39  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  23750189 atataacaatgcatatccctaccaactgagctatgctc 23750152  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42908811 - 42908770
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||||||||||||  ||||||||||| |||||||    
T  42908811 catataacaatgcatgtccctgccaactgagctaagctcacg 42908770  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52961137 - 52961178
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||||| |  |||||||||||||||||||    
T  52961137 catataacaatgcatgtccttgccaactgagctatgctcacg 52961178  T

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Target: scaffold0118 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 37388 - 37424
Alignment:
Q  6 aacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    ||||||||||||||||| |||||||||||||||||||    
T  37388 aacaatgcatgtccctaccaactgagctatgctcacg 37424  T

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Target: scaffold0308 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7116 - 7074
Alignment:
Q  1 catataacaatgcat-gtccctaacaactgagctatgctcacg 42  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  7116 catataataatgcattgtccctaacaactgagctatgctcacg 7074  T

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Target: scaffold1808 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 888 - 929
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||||||| |||||||| ||||||||| ||||||||||    
T  888 catataacaatgtatgtccctgacaactgagttatgctcacg 929  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1079 - 1038
Alignment:
Q  1 catataacaatgcatgtccctaacaactgagctatgctcacg 42  Q
    |||||||  ||||||||||||| |||||||||||||||||||    
T  1079 catataattatgcatgtccctaccaactgagctatgctcacg 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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