View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2929_low_12 (Length: 242)
Name: NF2929_low_12
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2929_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 18096646 - 18096841
Alignment:
| Q |
22 |
ttggtggagataaatgactctctctctgtcatctataattacgacatgatgcctgattttcatatctgggttttgggtgaagtgggtatcacggaatcat |
121 |
Q |
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| T |
18096646 |
ttggtggagttaaatgagtctctttctgtcatctataattacgacaggacgcctgattttcatatttgggttttgggtgaagtgggtgtcaaggaatcat |
18096745 |
T |
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| Q |
122 |
ggaccaagctcattgttgtcgggccttataattgttcgattgtctgtcctatctcagtagggaacaataaccgtatattcttcagggaaaaagatt |
217 |
Q |
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| T |
18096746 |
ggaccaagctctttgttgtcgggccttataattgtttgattgtctgtcctatctcagtagggaacaagaaccgtatatttttcagggaagaagatt |
18096841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 18139605 - 18139411
Alignment:
| Q |
22 |
ttggtggagataaatgactctctctctgtcatctataattacgacatgatgcctgattttcatatctgggttttgggtgaagtgggtatcacggaatcat |
121 |
Q |
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||||||||| |||| |||||||| |||||||| | |||||| |||| || ||||||||||||||| ||||||||||||||||||||||||| | |||||| |
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| T |
18139605 |
ttggtggagttaaacgactctctttctgtcatatttaattatgacaggacgcctgattttcatatatgggttttgggtgaagtgggtatcaagcaatcat |
18139506 |
T |
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| Q |
122 |
ggaccaagctcattgttgtcgggccttataattgttcgattgtctgtcctatctcagtagggaacaataaccgtatattcttcagggaaaaagat |
216 |
Q |
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| T |
18139505 |
ggaccaagctgtttgttgtcgggccttataattgttcgattgtctgtcctatctcagtagggaacaagaaccgtatattcttcagggaagaagat |
18139411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 18082229 - 18082424
Alignment:
| Q |
22 |
ttggtggagataaatgactctctctctgtcatctataattacgacatgatgcctgattttcatatctgggttttgggtgaagtgggtatcacggaatcat |
121 |
Q |
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| T |
18082229 |
ttggtggagttaaatgagtctttatctgtcatctataattatgacaggacgcctgattttcatatttgggttttggatgaagtgggtgtaaaggaatcat |
18082328 |
T |
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| Q |
122 |
ggaccaagctcattgttgtcgggccttataattgttcgattgtctgtcctatctcagtagggaacaataaccgtatattcttcagggaaaaagatt |
217 |
Q |
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| T |
18082329 |
ggaccaagctctttattgtcgggtcttataattgttcgattgtctgtcctatctcagtagggaacaagaaccgtatattcttcaggaaagaagatt |
18082424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 37875592 - 37875720
Alignment:
| Q |
22 |
ttggtggagataaatgactctctctctgtcatctataattacgacatgatgcctgattttcatatctgggttttgggtgaagtgggtatcacggaatcat |
121 |
Q |
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||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
37875592 |
ttggtggagttaaatgagtctctttctgtcatctataattacgacatgacgcctgattttcatatctgggttttgggtgaagtgggtattaaggaatcat |
37875691 |
T |
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| Q |
122 |
ggaccaagctcattgttgtcgggccttat |
150 |
Q |
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||||||| ||| ||||||||||||||||| |
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| T |
37875692 |
ggaccaatctctttgttgtcgggccttat |
37875720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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