View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2929_low_2 (Length: 484)

Name: NF2929_low_2
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2929_low_2
NF2929_low_2
[»] chr4 (4 HSPs)
chr4 (14-469)||(4368562-4369017)
chr4 (248-304)||(2888809-2888865)
chr4 (246-303)||(23033485-23033542)
chr4 (219-303)||(29262506-29262590)
[»] chr7 (5 HSPs)
chr7 (15-79)||(24498273-24498337)
chr7 (34-84)||(1478020-1478070)
chr7 (248-306)||(24547038-24547097)
chr7 (218-307)||(29135130-29135220)
chr7 (364-448)||(24498581-24498665)
[»] chr3 (4 HSPs)
chr3 (23-80)||(25074668-25074725)
chr3 (248-307)||(532274-532333)
chr3 (248-307)||(564858-564917)
chr3 (248-299)||(30421616-30421667)
[»] chr1 (2 HSPs)
chr1 (249-307)||(34372464-34372523)
chr1 (228-300)||(1273519-1273589)
[»] chr6 (1 HSPs)
chr6 (34-84)||(19179640-19179690)
[»] chr5 (5 HSPs)
chr5 (248-304)||(6522154-6522211)
chr5 (248-306)||(10842618-10842677)
chr5 (248-306)||(38726790-38726848)
chr5 (241-304)||(38048862-38048926)
chr5 (248-307)||(38779454-38779514)
[»] chr8 (1 HSPs)
chr8 (248-303)||(11319358-11319414)


Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Original strand, 4368562 - 4369017
Alignment:
Q  14 gagatagttcaccaagtttgtactcatgccatagtaagccaatctttcacaacattcatttcctgtaacaatttttcattttcaacatcttattgtgatc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4368562 gagatagttcaccaagtttgtactcatgccatagtaagccaatctttcacaacattcatttcctgttacaatttttcattttcaacatcttattgtgatc 4368661  T
Q  114 aaattctagtacaagaattgttagaacagcaaaagctggttgaaaattaagtatatgctaaaaaagaaaacagagaacacacggccaattgtggccactg 213  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  4368662 aaattctagtacaagaattattagaacagcaaaagctggttgaaaattaagtatatgctaaaaaagcaaacagagaacacacggccaattgtggccaccg 4368761  T
Q  214 gccacgtctacgagtgcagagtggttgcagtccatttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggtccaggaatat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368762 gccacgtctacgagtgcagagtggttgcagtccatttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggtccaggaatat 4368861  T
Q  314 atatcagatatgacatcaaagtttatgaaagatataaaactaagaatttaataccgagaataaagcggcatgctttccaatttcctgtctttttcttgtt 413  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368862 atatcagatatgacatcaaagtttatgaaagatataaaattaagaatttaataccgagaataaagcggcatgctttccaatttcctgtctttttcttgtt 4368961  T
Q  414 ggcagggtttttgtgaatgtcaattgttccatcttctgtatataaaccatcttctt 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368962 ggcagggtttttgtgaatgtcaattgttccatcttctgtatataaaccatcttctt 4369017  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 2888809 - 2888865
Alignment:
Q  248 tttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggtc 304  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||    
T  2888809 tttctattattcaagcttagagttacagattacaacttgtgtttaaataatacggtc 2888865  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 23033485 - 23033542
Alignment:
Q  246 catttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggt 303  Q
    ||||||||||||||||| ||||   |||||| | |||||||||||||| |||||||||    
T  23033485 catttctattattcaagtttaggattacaaattgcaacttgtgtttaattactacggt 23033542  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 29262506 - 29262590
Alignment:
Q  219 gtctacgagtgcagagtggttgcagtccatttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggt 303  Q
    |||| ||| |||||||| ||||||||   |||||||||| ||||||||| | || | | |||||||||||||| || ||||||||    
T  29262506 gtctccgactgcagagtagttgcagtaattttctattatccaagcttagggttatagattacaacttgtgtttcaaaactacggt 29262590  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 24498273 - 24498337
Alignment:
Q  15 agatagttcaccaagtttgtactcatgccatagtaagccaatctttcacaacattcatttcctgt 79  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  24498273 agatagttcaccaagtttgtactcataccatagtatgccaatctttcacagcattcatttcctgt 24498337  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 1478020 - 1478070
Alignment:
Q  34 tactcatgccatagtaagccaatctttcacaacattcatttcctgtaacaa 84  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  1478020 tactcataccatagtatgccaatctttcacagcattcatttcctgtcacaa 1478070  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 24547038 - 24547097
Alignment:
Q  248 tttctattattcaagcttagaggt-acaaagtacaacttgtgtttaaatactacggtcca 306  Q
    ||||||||| |||||||||| | | | ||||||||||||||||||||||||||| |||||    
T  24547038 tttctattaatcaagcttagggtttataaagtacaacttgtgtttaaatactacagtcca 24547097  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 29135220 - 29135130
Alignment:
Q  218 cgtctacgagtgcagagtggttgcagtccatttctattattcaagcttagagg-tacaaagtacaacttgtgtttaaatactacggtccag 307  Q
    ||||| ||| ||||||| || |||| | | |||| |||||||||||||||||  ||| ||||||| ||||  |||||||||||||||||||    
T  29135220 cgtctccgattgcagagcggctgcaatacctttcgattattcaagcttagagactaccaagtacagcttgcatttaaatactacggtccag 29135130  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 448
Target Start/End: Original strand, 24498581 - 24498665
Alignment:
Q  364 ataccgagaataaagcggcatgctttccaatttcctgtctttttcttgttggcagggtttttgtgaatgtcaattgttccatctt 448  Q
    ||||| ||||| || | ||| |||||||| ||||| |||||||||||||||||||| ||| |||  || ||||| || |||||||    
T  24498581 ataccaagaatgaaccagcaagctttccagtttccagtctttttcttgttggcaggttttctgtagatatcaatggtcccatctt 24498665  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 25074668 - 25074725
Alignment:
Q  23 caccaagtttgtactcatgccatagtaagccaatctttcacaacattcatttcctgta 80  Q
    |||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||||    
T  25074668 caccaaatttgtgctcatcccataataagccaatctctcacaacattcatttcctgta 25074725  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 532274 - 532333
Alignment:
Q  248 tttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggtccag 307  Q
    |||||||||||||   |||||| |||||| ||||||||||||||||||| ||| ||||||    
T  532274 tttctattattcacttttagagttacaaattacaacttgtgtttaaatattacagtccag 532333  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 564858 - 564917
Alignment:
Q  248 tttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggtccag 307  Q
    |||||||||||||   |||||| |||||| ||||||||||||||||||| ||| ||||||    
T  564858 tttctattattcacttttagagttacaaattacaacttgtgtttaaatattacagtccag 564917  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 30421667 - 30421616
Alignment:
Q  248 tttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatacta 299  Q
    ||||||||||||||||||| || |||| | |||||| |||||||||||||||    
T  30421667 tttctattattcaagcttaaagttacagattacaacatgtgtttaaatacta 30421616  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 34372464 - 34372523
Alignment:
Q  249 ttctattattcaagcttagaggt-acaaagtacaacttgtgtttaaatactacggtccag 307  Q
    ||||||||||||||||||| | | |||||||||||||||| ||||||||||||| |||||    
T  34372464 ttctattattcaagcttagggtttacaaagtacaacttgtatttaaatactacgatccag 34372523  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 1273589 - 1273519
Alignment:
Q  228 tgcagagtggttgcagtccatttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactac 300  Q
    ||||||||| |||||||   ||||||||| |||||||||||| ||||   |||||||||||||||||||||||    
T  1273589 tgcagagtgattgcagtgattttctattagtcaagcttagagttacat--tacaacttgtgtttaaatactac 1273519  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 19179640 - 19179690
Alignment:
Q  34 tactcatgccatagtaagccaatctttcacaacattcatttcctgtaacaa 84  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  19179640 tactcataccatagtatgccaatctttcacagcattcatttcctgtcacaa 19179690  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 6522154 - 6522211
Alignment:
Q  248 tttctattattcaagcttag-aggtacaaagtacaacttgtgtttaaatactacggtc 304  Q
    |||||||||||||| ||||| |  |||||| |||||||||||||||||||||||||||    
T  6522154 tttctattattcaaacttaggatttacaaattacaacttgtgtttaaatactacggtc 6522211  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 10842618 - 10842677
Alignment:
Q  248 tttctattattcaagcttag-aggtacaaagtacaacttgtgtttaaatactacggtcca 306  Q
    |||||||||||||||||||| |  |||| | ||||| |||||||||||||||||||||||    
T  10842618 tttctattattcaagcttaggatttacatattacaatttgtgtttaaatactacggtcca 10842677  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 38726790 - 38726848
Alignment:
Q  248 tttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggtcca 306  Q
    |||||||||||||| ||||| | || | | ||||||||||||||||||||| |||||||    
T  38726790 tttctattattcaaacttagggttagagattacaacttgtgtttaaatacttcggtcca 38726848  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 38048926 - 38048862
Alignment:
Q  241 cagtccatttctattattcaagcttagaggt-acaaagtacaacttgtgtttaaatactacggtc 304  Q
    |||| ||||||||||||||||| | |||| | ||| | |||||||||||||||||||||| ||||    
T  38048926 cagtacatttctattattcaagttaagagtttacagattacaacttgtgtttaaatactatggtc 38048862  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 38779514 - 38779454
Alignment:
Q  248 tttctattattcaagcttagaggta-caaagtacaacttgtgtttaaatactacggtccag 307  Q
    ||||||||| |||||||||| | |  || ||||||||||||||||||||||||| ||||||    
T  38779514 tttctattactcaagcttagggtttgcatagtacaacttgtgtttaaatactacagtccag 38779454  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 11319414 - 11319358
Alignment:
Q  248 tttctattattcaagcttagag-gtacaaagtacaacttgtgtttaaatactacggt 303  Q
    ||||||||||||||||||||||  |||| | ||||||||||| |||||||| |||||    
T  11319414 tttctattattcaagcttagagtttacagattacaacttgtgcttaaatacgacggt 11319358  T

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