View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2929_low_3 (Length: 451)
Name: NF2929_low_3
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2929_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 46 - 433
Target Start/End: Original strand, 25106592 - 25106979
Alignment:
| Q |
46 |
tacgttgtctatctaaagggatctaagaaacatattatggaatcaaagaaagaaatgaaagttaattacagtcaatatcttgatttgttactagattgtg |
145 |
Q |
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| T |
25106592 |
tacgttgtctatctaaagggatctaagaaacatattatggaatcaaagaaagcaatgaaagttaattacagtcaatatcttgatctgttactagattgtg |
25106691 |
T |
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| Q |
146 |
gtggtacatgatgagtgttttaatctgcataaggattattcctttatatggttgaattgttacgcctttagttttttatatgatatacaattatacatgc |
245 |
Q |
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| T |
25106692 |
gtggtacatgatgagtgttttaatctgcataaggattattcctttatatggttgaattgttacacctttagttttttatatgatatacaattatacatgc |
25106791 |
T |
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| Q |
246 |
tataggaatatatgattgatttatccatgacattattacttgtaaatgtcaaattgtatttatgtactcagtttctaaagttttatagtttctagtttcc |
345 |
Q |
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| T |
25106792 |
tataggaatatatgattgatttatcgatgacattattacttgtaaatgtcaaattgtatttatgtactcagtttctaaagttttatagtttctagtttcc |
25106891 |
T |
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| Q |
346 |
attggcagacttcatatgatcagtctcgtgctcactttttgaaagaacttgatggaatttggtttgatcatataccagatgctctaag |
433 |
Q |
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| T |
25106892 |
attggcagacttcatatgatcagtctcgtgctcactttttgaaagaacttgatggaatttggtttgatcatataccagatgctctaag |
25106979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 25106457 - 25106487
Alignment:
| Q |
15 |
ctgtggtaccaatttgaaactgatcagtgga |
45 |
Q |
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| T |
25106457 |
ctgtggtaccaatttgaaactgatcagtgga |
25106487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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