View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2929_low_4 (Length: 338)
Name: NF2929_low_4
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2929_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 4325680 - 4325987
Alignment:
| Q |
20 |
tatctttgatagaatcttttaaaccttgnnnnnnncctttcggtgatagttgacatgttatgctatcctatgatatcaaacaaacaaagtactaacaagc |
119 |
Q |
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| T |
4325680 |
tatctttgatagaattttttaaaccttgtttttt-cctttcggtgatagttgacatgttatgctatcctatgatatcaaacaaacaaagtactaacaagc |
4325778 |
T |
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| Q |
120 |
ctaaattattactgcctataattgaaagatataatctatacacaataaaatcctttatatgtaaacaagtaaacaacattactctaacagagaatgtaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4325779 |
ctaaattattactgcctataattgaaagatataatctatacacaataaaatcctttatatgtaaacaagtaaacaacattactctaacagagaatgtaat |
4325878 |
T |
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| Q |
220 |
cttaactagtaactacttaactgtagcagtgtgagtgtcccctttattttattttcccgcttccataagcatacatgtgttcattttttctctctaaatt |
319 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4325879 |
cttaactagtaactacttaaatgtagcagtgtgagtgtcccctttattttattttcccgcttccataagcatacatgtgttcattttttctctctaaatt |
4325978 |
T |
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| Q |
320 |
gggcctttg |
328 |
Q |
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||||||||| |
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| T |
4325979 |
gggcctttg |
4325987 |
T |
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