View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2929_low_5 (Length: 336)
Name: NF2929_low_5
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2929_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 160 - 327
Target Start/End: Original strand, 30349411 - 30349577
Alignment:
| Q |
160 |
tattatgaaacacatatcagaataaactttcctctacgttaggaaagacatacataataagtgcatggaaattaaaacataatnnnnnnntgtgaacaag |
259 |
Q |
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| T |
30349411 |
tattatgaaacacatatcagaataaactttcctctacgttaggaaagacatacataataagtgcatggaaattaaaacataat-aaaaaatgtgaacaag |
30349509 |
T |
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| Q |
260 |
aataagagaatagaacattaatcagatgaaacttatttgaacaagtttagctttagtttcatgatgat |
327 |
Q |
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| T |
30349510 |
aataagagaatagaacattaataagatgaaacttatttgaacaagtttagctttagtttcatgatgat |
30349577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 30348856 - 30348962
Alignment:
| Q |
16 |
ctatgttcatcatacacacatataatcgttttgtaaaggcctgttcatcatcatattcaaacattttatcgactg-aaaagcaatgtacacgtaattaag |
114 |
Q |
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| T |
30348856 |
ctatgttcatcatacacacatataatcattttgtaaaggcttgttcatcatcatattcaaacattttatcgactgaaaaagcaatgtacacgtaattaag |
30348955 |
T |
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| Q |
115 |
tactagt |
121 |
Q |
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||||||| |
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| T |
30348956 |
tactagt |
30348962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 30348974 - 30349005
Alignment:
| Q |
137 |
tgttactaaggttaattttgaattattatgaa |
168 |
Q |
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| T |
30348974 |
tgttactaaggttaattttgaattattatgaa |
30349005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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