View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2929_low_7 (Length: 284)
Name: NF2929_low_7
Description: NF2929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2929_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 36 - 283
Target Start/End: Complemental strand, 514135 - 513888
Alignment:
| Q |
36 |
catgtcaaactcttgaaactcaacaaggagtcaatgaaacatgaagtaaaagtcagataattgggaaagtcggtggaaaaggatgaagaggtcaatgttg |
135 |
Q |
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|||||||||||| | |||| |||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||| |
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| T |
514135 |
catgtcaaactcatcaaacacaacaacgagtcaatgaaacatgaagtaaaagtctgatcgttgggaaagtcgtcggaaaaggatatagaggtcaatgttg |
514036 |
T |
|
| Q |
136 |
gtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaagcttacagtttttgaacaagtggaa |
235 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
514035 |
gtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaagaagcttacagtttttgaacaagtggaa |
513936 |
T |
|
| Q |
236 |
aagcaattggttattcaagtgacgatgagcagagagatcaatcttgcg |
283 |
Q |
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|||| |||||| || |||||||| |||| |||||||||||||||||| |
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| T |
513935 |
aagcgattggtcatccaagtgactatgaagagagagatcaatcttgcg |
513888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 51763785 - 51763736
Alignment:
| Q |
107 |
ggtggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaag |
156 |
Q |
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| T |
51763785 |
ggtggaaaaggataaagacgtcaatgttggtctttcacggagagcagaag |
51763736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 371242 - 371422
Alignment:
| Q |
56 |
caacaaggagtcaatgaaacatgaagtaaaagtca-gataattgggaaagtcggtggaaaaggatgaagaggtcaatgttggtctctgacggagagcaga |
154 |
Q |
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| T |
371242 |
caacaaggagtcaatgaaacatgaagtaaaagtcaagatcattgggaaagtcggtggaaaaggataaagaggtcaatgttggtctctgaaggagagcaga |
371341 |
T |
|
| Q |
155 |
agcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaagcttacagtttttgaacaagtggaaaagcaatt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
371342 |
agcaataccttgattggttatgtgatagctattaaagatgataacctc--------gcttacagtttttgaacaagtggaaaagcaatt |
371422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 21833689 - 21833562
Alignment:
| Q |
111 |
gaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaagaa |
210 |
Q |
| |
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||||||||| |||| ||||||||||||||| ||||||||| |||||||| |||| || |||| |||| | || ||| ||||| | ||||| ||||| |
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| T |
21833689 |
gaaaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaa |
21833590 |
T |
|
| Q |
211 |
gcttacagtttttgaacaagtggaaaag |
238 |
Q |
| |
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||||||| || || | |||||||||||| |
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|
| T |
21833589 |
gcttacaattctttagcaagtggaaaag |
21833562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 1601177 - 1601225
Alignment:
| Q |
111 |
gaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaa |
159 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
1601177 |
gaaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa |
1601225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 532590 - 532629
Alignment:
| Q |
207 |
agaagcttacagtttttgaacaagtggaaaagcaattggt |
246 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |||||| |
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| T |
532590 |
agaagcttacaatttttgaacaagtggaaaagcgattggt |
532629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 53761200 - 53761152
Alignment:
| Q |
112 |
aaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaat |
160 |
Q |
| |
|
||||||| |||| |||||||||||||| | |||||||||||||||||| |
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|
| T |
53761200 |
aaaaggagaaagacgtcaatgttggtctttcacggagagcagaagcaat |
53761152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 18315021 - 18314886
Alignment:
| Q |
109 |
tggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggttatgtgatagctattaaagatgataagctcttgaag |
208 |
Q |
| |
|
|||||| |||| |||| |||| |||||||||| |||||||||| |||||||||| |||||||| |||| | | ||| ||||| ||||| || |
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| T |
18315021 |
tggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgag |
18314922 |
T |
|
| Q |
209 |
aagcttacagtttttgaacaagtggaaaagcaattg |
244 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| |
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| T |
18314921 |
aagcttacagttcttgaacaagtggaaaagcgattg |
18314886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 9581450 - 9581497
Alignment:
| Q |
200 |
ctcttgaagaagcttacagtttttgaacaagtggaaaagcaattggtt |
247 |
Q |
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||||| |||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
9581450 |
ctcttcaagaagattacaatttttgaacaagtggaaaagcaaatggtt |
9581497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 9587021 - 9587068
Alignment:
| Q |
200 |
ctcttgaagaagcttacagtttttgaacaagtggaaaagcaattggtt |
247 |
Q |
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||||| |||||| ||||| ||||||||||||||||||||| ||||||| |
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|
| T |
9587021 |
ctcttcaagaagattacaatttttgaacaagtggaaaagcgattggtt |
9587068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 41900854 - 41900804
Alignment:
| Q |
109 |
tggaaaaggatgaagaggtcaatgttggtctctgacggagagcagaagcaa |
159 |
Q |
| |
|
||||||| ||| |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
41900854 |
tggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaa |
41900804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 6588654 - 6588601
Alignment:
| Q |
121 |
aagaggtcaatgttggtctctgacggagagcagaagcaataccttgattggtta |
174 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
6588654 |
aagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggtta |
6588601 |
T |
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