View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_high_12 (Length: 378)
Name: NF2930_high_12
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 43702297 - 43702578
Alignment:
| Q |
22 |
atataatgtgtaacaaccttaacaaatcattgaagaccaacaaa---aatatggattgcattcaacatggtagacaaacatgactaactaacaaaaccta |
118 |
Q |
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| T |
43702297 |
atataatgtgtaacaaccttaacaaatcattgaagaccaacatatttaatatggattgcattcaacatcatagacaaacatgactaactaacaaaaccta |
43702396 |
T |
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| Q |
119 |
aaatctcaatctccaannnnnnnnnnnnnnaaatcttcaaataattgagttaactaaaacaatctccaaataatcaagttaagaccgttggattaattaa |
218 |
Q |
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| T |
43702397 |
aaatctcaatctccaatttttttttt----aaatcttcaaataattgagttaactaaaacaatctccaaataatcaagttaagaccgttggattaattaa |
43702492 |
T |
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| Q |
219 |
cggccaggattcgttggggaatctgaattctgtgttgcaaccgcatcatgtaattccatacccccgcataacacaatgcaaaaagc |
304 |
Q |
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| T |
43702493 |
cggccacgattcgttggggaatctgaattctgtgttgcaaccgcatcatgtaattccatacccccgcataacacaatgcaaaaagc |
43702578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 43702583 - 43702613
Alignment:
| Q |
329 |
gatcgaaaacgacagcgtttgaagtacgcaa |
359 |
Q |
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| T |
43702583 |
gatcgaaaacgacagcgtttgaagtacgcaa |
43702613 |
T |
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