View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_high_14 (Length: 349)
Name: NF2930_high_14
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_high_14 |
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| [»] scaffold0126 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 24978891 - 24978570
Alignment:
| Q |
19 |
acccaaaacgtgtttgtgttctaaaatagctaaaaagcaacaagttatggtgaggactctatgttatgtcttcaagttacggttacgactatgacatcac |
118 |
Q |
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| T |
24978891 |
acccaaaacgtgtttgtgttctaaaatagctaaaaagcaacaagttatggtgaggactctatgttatgtcttcaagttacggttacgactatgacatcac |
24978792 |
T |
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| Q |
119 |
acagatatgggtttcaaaatgtatctttggatgaagattatatcaatgagggacactaatatcttccatagtctcacgtgtttatgttcaatgtcacatt |
218 |
Q |
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| T |
24978791 |
acagatatgggtttcaaaatgtatctttggatgaagattatatcaatgagggacactaatatcttccatagtctcacgtgtttatgttcaatgtcacatt |
24978692 |
T |
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| Q |
219 |
gttcatttagtaacttcgatataaattcaatgattaattaatatcttcattgatttaaatatgaatcacaaacaaccatgaaatatatcttatcgtgcaa |
318 |
Q |
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| T |
24978691 |
gttcatttagtaacttcgatataaattcaatgattaattaatatcttcattgattt--acatgaatcacaaacaaccatgaaatatatcttatcgtgcaa |
24978594 |
T |
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| Q |
319 |
cttgtccttatattggtacctttg |
342 |
Q |
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| T |
24978593 |
cttgtccttatattggtacctttg |
24978570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 21106 - 21230
Alignment:
| Q |
29 |
tgtttgtgttctaaaatagctaaaaagcaacaagttatggtgaggactctatgttatgtcttcaagttacggttacgactatgacatcacacagatatgg |
128 |
Q |
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| T |
21106 |
tgtttgtattctagaatagctaaaaagcaacaagttatggtgaggactctatgttatgtcttcaagttacggttacgaccatgacatcacatagatatgg |
21205 |
T |
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| Q |
129 |
gtttcaaaatgtatctttggatgaa |
153 |
Q |
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| T |
21206 |
gtttcaaaatgtatctttggatgaa |
21230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 21232 - 21384
Alignment:
| Q |
200 |
ttatgttcaatgtcacattgttcatttagtaacttcgata----------taaattcaatgattaattaatatcttcattgatttaaatatgaatcacaa |
289 |
Q |
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|||||||| |||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||| | ||||||||||| |
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| T |
21232 |
ttatgttccatgtcacattgttcatttagtaaccttgatactcaatgttataaattcaatgattaattaatatcttcattcattt--acatgaatcacaa |
21329 |
T |
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| Q |
290 |
acaaccatgaaatatatctta----tcgtgcaacttgtccttatattggtacctt |
340 |
Q |
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| T |
21330 |
acaaccatgaaagatatcttaaaggtcgtgcaacttgtccttatattggtacctt |
21384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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