View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_high_2 (Length: 541)
Name: NF2930_high_2
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 43702234 - 43701831
Alignment:
| Q |
1 |
tgaaaggaaaataacttattacttaaagatgaaaaagttgaaagatgtatctatttaatcnnnnnnnnn------atttcagttaccaaagggttgagt- |
93 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43702234 |
tgaaagtaaaataaattattacttaaagatgaaaaagttgaaagatgtatctatttaatctttttattttattttatttcagttaccaaagggttgagtc |
43702135 |
T |
|
| Q |
94 |
tgtcaaaactatcatgtgactactccgaccagatataatgattgaactctcacacgtcataagtcatcatttagatttatgtttctgtctcgttaataac |
193 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
43702134 |
tgtcaaaactatcatgtgactatcccgatcagatataatgattgaactctcgcacgtcataagtcatcatttagatatatgtttcagtctctttaataac |
43702035 |
T |
|
| Q |
194 |
caaggatctaaattctatataagtaataaggttgtattttagacaaaccatattccctcatccacaagtttttgctctttccctaaaatctataccattc |
293 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43702034 |
caaggatccaaatcctatataagtaataaggttgtattttaaacaaaccatattccctcatccacaagtttttgctctttccctaaaatctataccattc |
43701935 |
T |
|
| Q |
294 |
atctctttttgatattgtcgtttccattgttgcgatcattgttcatccaacttcataattgatttgaccaatgatttgtgggctcaatagcaaggtaatg |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43701934 |
atctctttttgatattgtcgtttccattgttgcgatcattgttcatccaacttcataattgatttgaccaatgatttgtgggctcaatagcaaggcaatg |
43701835 |
T |
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| Q |
394 |
tgca |
397 |
Q |
| |
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|||| |
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| T |
43701834 |
tgca |
43701831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 459 - 534
Target Start/End: Complemental strand, 43701769 - 43701694
Alignment:
| Q |
459 |
gccataggtagaggttctagcaggccaccatttacattatgttttgcattttgtagtgtggtccatatgatgatgt |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43701769 |
gccataggtagaggttctagcaggccaccatttacattatgttttgcattttgtagtgtggtccatatgatgatgt |
43701694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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