View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2930_high_24 (Length: 249)

Name: NF2930_high_24
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2930_high_24
NF2930_high_24
[»] chr1 (6 HSPs)
chr1 (1-243)||(7583267-7583509)
chr1 (132-229)||(7097868-7097962)
chr1 (138-178)||(21516785-21516825)
chr1 (13-93)||(42747589-42747669)
chr1 (46-87)||(3121424-3121465)
chr1 (139-175)||(31117863-31117899)
[»] chr5 (3 HSPs)
chr5 (154-232)||(17981321-17981401)
chr5 (183-225)||(30202553-30202595)
chr5 (31-93)||(32882703-32882765)
[»] chr4 (4 HSPs)
chr4 (30-93)||(13615247-13615310)
chr4 (30-98)||(25885955-25886023)
chr4 (4-98)||(21501594-21501689)
chr4 (12-92)||(39276338-39276418)
[»] chr3 (3 HSPs)
chr3 (110-168)||(34778135-34778194)
chr3 (55-131)||(44560128-44560204)
chr3 (47-87)||(35682500-35682540)
[»] chr7 (3 HSPs)
chr7 (46-92)||(18654737-18654783)
chr7 (46-90)||(28175631-28175675)
chr7 (46-86)||(10097322-10097362)
[»] chr6 (1 HSPs)
chr6 (13-86)||(1288292-1288365)
[»] chr2 (1 HSPs)
chr2 (52-84)||(36625959-36625991)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7583509 - 7583267
Alignment:
Q  1 aagttataagcttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaattt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  7583509 aagttataagcttaagctacttgaacttacttatcaaataacacaataagctcataaaaataaactataagctcgtgagaaaatgacagttacgaaatat 7583410  T
Q  101 gnnnnnnnnagtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtcttaccaaacagacctaaaagaaacacaatcaaaagg 200  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7583409 gttttttttagtcatatgaacttataagttaataaaatataaaccacaagctcaaatatgtgtcttaccaaacagacctaaaagaaacacaatcaaaagg 7583310  T
Q  201 atggagggagaataaagagcctacctgttcaaacatctctgct 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7583309 atggagggagaataaagagcctacctgttcaaacatctctgct 7583267  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 7097868 - 7097962
Alignment:
Q  132 ataaaatataaaccacaagctcaaatatgtgtcttaccaaacaga-cctaaaagaaacacaatcaaaaggatggagggagaataaagagcctacctgtt 229  Q
    ||||| ||||||||  ||||||||||||||||||||| ||| ||| ||||||| || |||||| ||||||||    |||||||||||||||||||||||    
T  7097868 ataaactataaaccgtaagctcaaatatgtgtcttactaaatagaccctaaaataatcacaatgaaaaggat----ggagaataaagagcctacctgtt 7097962  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 21516785 - 21516825
Alignment:
Q  138 tataaaccacaagctcaaatatgtgtcttaccaaacagacc 178  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  21516785 tataagccataagctcaaatatgtgtcttaccaaacagacc 21516825  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 42747669 - 42747589
Alignment:
Q  13 taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttac 93  Q
    |||| |||||||| |  ||||| ||| ||||| |||||||||||||| ||| |||||| || ||||| |||||||||||||    
T  42747669 taagttacttgaattagcttataaaaaaacactataagctcataaaattaagctataagcttgtgagtaaatgacagttac 42747589  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 3121465 - 3121424
Alignment:
Q  46 ataagctcataaaaataaactataaactcgtgagaaaatgac 87  Q
    ||||||| ||||||||||||||||||||| | ||||||||||    
T  3121465 ataagctaataaaaataaactataaactcataagaaaatgac 3121424  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 31117863 - 31117899
Alignment:
Q  139 ataaaccacaagctcaaatatgtgtcttaccaaacag 175  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  31117863 ataagccataagctcaaatatgtgtcttaccaaacag 31117899  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 17981321 - 17981401
Alignment:
Q  154 aaatatgtgtcttaccaaacagac-ctaaaagaaacacaatcaaaa-ggatggagggagaataaagagcctacctgttcaa 232  Q
    |||||| |||||||||||||  || ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  17981321 aaatatttgtcttaccaaacgaactctaaaagaaacacaatcaaaaaggatggagggagaataaagagcttacccgttcaa 17981401  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 30202553 - 30202595
Alignment:
Q  183 agaaacacaatcaaaaggatggagggagaataaagagcctacc 225  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  30202553 agaaacataatcaaaaggatggcgggagaataaagagcctacc 30202595  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 32882765 - 32882703
Alignment:
Q  31 ttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttac 93  Q
    |||||||| ||||  ||||||||| |||||||| |||||| ||||||||||||||||| ||||    
T  32882765 ttatcaaaaaacattataagctcaaaaaaataagctataagctcgtgagaaaatgacaattac 32882703  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 13615247 - 13615310
Alignment:
Q  30 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttac 93  Q
    |||||| || ||||||||||  ||||||||||||  ||||||||||||||||||||||||||||    
T  13615247 cttatcgaaaaacacaataatatcataaaaataaggtataaactcgtgagaaaatgacagttac 13615310  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 25886023 - 25885955
Alignment:
Q  30 cttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaat 98  Q
    ||||||||| ||||| ||||||| ||||||| || |||||| |||||| ||||||||||||||| ||||    
T  25886023 cttatcaaaaaacacgataagctaataaaaacaagctataagctcgtgtgaaaatgacagttacaaaat 25885955  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 21501689 - 21501594
Alignment:
Q  4 ttataagct-taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagttacgaaat 98  Q
    ||||||||| |||| |||||||| |  ||||||||| ||||| ||| |||  ||||||||| |||||| ||||||||||| |||||||||| ||||    
T  21501689 ttataagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctataagctcgtgagaaagtgacagttaccaaat 21501594  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 39276418 - 39276338
Alignment:
Q  12 ttaagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatgacagtta 92  Q
    ||||| |||||||| |  ||||||||| |||   |||||||  |||||||||  ||||| |||||||||||||||||||||    
T  39276418 ttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagtta 39276338  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 34778194 - 34778135
Alignment:
Q  110 agtcatatgaacttataagtta-ataaaatataaaccacaagctcaaatatgtgtcttac 168  Q
    |||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||    
T  34778194 agtcatatgaacttataagttatataaattataatccataaactcaaatatgtgtcttac 34778135  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 44560204 - 44560128
Alignment:
Q  55 taaaaataaactataaactcgtgagaaaatgacagttacgaaatttgnnnnnnnnagtcatatgaacttataagtta 131  Q
    |||||||||| |||||||||||||||||||||| ||||| |||  ||        ||||||||||||||||||||||    
T  44560204 taaaaataaattataaactcgtgagaaaatgacggttaccaaacatgtcttttttagtcatatgaacttataagtta 44560128  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 35682540 - 35682500
Alignment:
Q  47 taagctcataaaaataaactataaactcgtgagaaaatgac 87  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  35682540 taagctaataaaaataaactataagcttgtgagaaaatgac 35682500  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 18654737 - 18654783
Alignment:
Q  46 ataagctcataaaaataaactataaactcgtgagaaaatgacagtta 92  Q
    |||||||||||||||||| |||||||||| |||||||||||| ||||    
T  18654737 ataagctcataaaaataatctataaactcatgagaaaatgaccgtta 18654783  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 28175631 - 28175675
Alignment:
Q  46 ataagctcataaaaataaactataaactcgtgagaaaatgacagt 90  Q
    |||||||||||||||||| |||||||||| | |||||||||||||    
T  28175631 ataagctcataaaaataagctataaactcattagaaaatgacagt 28175675  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 10097322 - 10097362
Alignment:
Q  46 ataagctcataaaaataaactataaactcgtgagaaaatga 86  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  10097322 ataagcttataaaaataaacaataaactcatgagaaaatga 10097362  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 1288365 - 1288292
Alignment:
Q  13 taagatacttgaacttacttatcaaataacacaataagctcataaaaataaactataaactcgtgagaaaatga 86  Q
    ||||||||||||| | |||||||||| ||||  |||||||||| | ||||| |||| ||||||||  |||||||    
T  1288365 taagatacttgaattaacttatcaaaaaacattataagctcatgagaataagctatgaactcgtgtaaaaatga 1288292  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 36625959 - 36625991
Alignment:
Q  52 tcataaaaataaactataaactcgtgagaaaat 84  Q
    |||||||||||||||||| ||||||||||||||    
T  36625959 tcataaaaataaactatatactcgtgagaaaat 36625991  T

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