View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_high_25 (Length: 248)
Name: NF2930_high_25
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 1842088 - 1841918
Alignment:
| Q |
65 |
gattttagtccctcagtttcataagtttgaggatatannnnnnncacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgt |
164 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
1842088 |
gattttagtccctcagtttcataagtttgaggatatatttttttcacaatccaattgcaagcttattcttgatg--acttgtcattttcattaatgacgt |
1841991 |
T |
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| Q |
165 |
gaaattacattttagtgttcccttgttccttgaagttgtggtatgttttgagattcgtgatttatatgattca |
237 |
Q |
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| T |
1841990 |
gaaattacattttaatgttcccctgttccttgaagttgtggtatgttttgagattcgtgacttatatgattca |
1841918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1842184 - 1842111
Alignment:
| Q |
1 |
cttttttagatagaaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacatgattttagtc |
74 |
Q |
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| T |
1842184 |
cttttttagatagaaaaatataggcttaaaggcacttctcgtccctatcttttaactgaaacatgattttagtc |
1842111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 1840573 - 1840749
Alignment:
| Q |
1 |
cttttttagatagaaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacat----gattttagtccctcagtttcataagtttgagg |
96 |
Q |
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| T |
1840573 |
cttttttagatggaaaaatataggcttaaatgcacttatcgtgtctctcttttaactgataaattcaggattttagtccctcagtttcttaagtttgagg |
1840672 |
T |
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| Q |
97 |
ata-tannnnnnncacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgtgaaattacattt |
176 |
Q |
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| T |
1840673 |
atattttttttttcacaacccagttgcgagttcattctt----tgacttgtcattttcattaatgacatggaattacattt |
1840749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41379613 - 41379544
Alignment:
| Q |
1 |
cttttttagatagaaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacatgatttt |
70 |
Q |
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||||||| | |||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |
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| T |
41379613 |
cttttttgggtagaaaaatataggcttaaatgcacttttcgtccctctattttaactgaaacatgatttt |
41379544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 176
Target Start/End: Complemental strand, 41379521 - 41379414
Alignment:
| Q |
65 |
gattttagtccctcagtttcataagtttgaggatatannnnnnncacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgt |
164 |
Q |
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||||||||||||| ||||||| |||||||||||| | ||||||| | |||| ||||||||||||||| ||||||||||||||||||||| || |
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| T |
41379521 |
gattttagtcccttagtttcacaagtttgaggattt--ttttttcacaacctagttgcgagcttattctttatg--acttgtcattttcattaatgatgt |
41379426 |
T |
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| Q |
165 |
gaaattacattt |
176 |
Q |
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| T |
41379425 |
ggaattacattt |
41379414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 18635298 - 18635472
Alignment:
| Q |
65 |
gattttagtccctcagtttcataagtttgaggata----tannnnnnncacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatg |
160 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
18635298 |
gattttagtccctcagtttcataagtttgaggataattttttttttttcacaacccagttgcaagcttattctttatg--acttgtcattttcattaatg |
18635395 |
T |
|
| Q |
161 |
acgtgaaattacattttagtgttcccttgttccttgaagttgtggtatgttttgagattcgtgatttatatgattca |
237 |
Q |
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| T |
18635396 |
acgtgaaattacattttagtgttcccctgttccttgaagttgtggtatgttttgagattcatgacttatatgattca |
18635472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 18636853 - 18636674
Alignment:
| Q |
1 |
cttttttagatagaaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacat----gattttagtccctcagtttcataagtttgagg |
96 |
Q |
| |
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||||||||||| ||||||||||||||||| || || |||| || |||||||||||| | || |||||||||||||||||||| ||||||||||| |
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| T |
18636853 |
cttttttagatgaaaaaatataggcttaaatgcaattatcgtgtctctcttttaactgataaattcaggattttagtccctcagtttcttaagtttgagg |
18636754 |
T |
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| Q |
97 |
atatannnnnnn--cacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgtgaaattacattt |
176 |
Q |
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|||| ||||||||| |||| || |||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
18636753 |
atatttttttttttcacaacccagttgcgagtttattctttatg--acttgtcattttcattaatgacgtggaattacattt |
18636674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18635202 - 18635275
Alignment:
| Q |
1 |
cttttttagatagaaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacatgattttagtc |
74 |
Q |
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|||||||||||||||||||||||| ||| || ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
18635202 |
cttttttagatagaaaaatataggtttacaggcactttccgtccctatctcttaactgaaacatgattttagtc |
18635275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 13211508 - 13211579
Alignment:
| Q |
21 |
taggcttaaagacacttctcgtccctatcttttaactgaaacatgattttagtccctcagtttcataagttt |
92 |
Q |
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| T |
13211508 |
taggcttaaatacacttttggtccctataatttaaatgaaacaagattttagtcccccagtttcacaagttt |
13211579 |
T |
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