View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_high_27 (Length: 246)
Name: NF2930_high_27
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 9494525 - 9494754
Alignment:
| Q |
2 |
tttaccactacctcaaaatcaatactgttgaaatgcagcaacgagaatcggaacgttattcctgtcatgtctgccaggttcgaagacatttgcattttca |
101 |
Q |
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| T |
9494525 |
tttaccactacctcaaaaccaatactgttgaaatgcagcaacgagaatcggaacggtattcctgtaatgactgcctggtttgaagacatctgcattttca |
9494624 |
T |
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| Q |
102 |
aagggcggccttatgtggtacacaaaactggacggacagctactcttgaactggatgacttgactgtccagttagtggctgaatctttggtttctggtnn |
201 |
Q |
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| T |
9494625 |
aagggcggccttatgtggtacacaaaactggacggacagctactcttggactggatgacttcactttcgagttagtggctgaatctttggtttctggtgg |
9494724 |
T |
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| Q |
202 |
nnnnnacatcaaattcttagtcgagagtga |
231 |
Q |
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| T |
9494725 |
gggggacatcaaattcttagtcgagagtga |
9494754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 8814168 - 8814246
Alignment:
| Q |
112 |
ttatgtggtacacaaaactggacggacagctactcttgaactggatgacttgactgtccagttagtggctgaatctttg |
190 |
Q |
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| T |
8814168 |
ttatgtggtagacaaaactggacagactgttactgttggaccggatgactcaactgttcagttagtggctgaatctttg |
8814246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 251179 - 251247
Alignment:
| Q |
85 |
agacatttgcattttcaaagggcggccttatgtggtacacaaaactggacggacagctactcttgaact |
153 |
Q |
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| T |
251179 |
agacatttgtgttttcaaaggccgaccttatgcggtagacaatactggacggacagttactgttgaact |
251247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 20694091 - 20694184
Alignment:
| Q |
96 |
ttttcaaagggcggccttatgtggtacacaaaactggacggacagctactcttgaactggatgacttgactgtccagttagtggctgaatcttt |
189 |
Q |
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| T |
20694091 |
ttttcaaagggaaaccttatgtggtcgacaaagttggccggacaattacatttgaaccggatgacttgactgttcagttagtggccgaaccttt |
20694184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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