View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2930_high_33 (Length: 205)

Name: NF2930_high_33
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2930_high_33
NF2930_high_33
[»] chr4 (2 HSPs)
chr4 (18-191)||(19050578-19050750)
chr4 (18-103)||(19051018-19051103)
[»] chr8 (4 HSPs)
chr8 (18-184)||(5737587-5737758)
chr8 (106-182)||(41121931-41122007)
chr8 (25-102)||(5737246-5737323)
chr8 (18-70)||(5965115-5965167)
[»] chr7 (1 HSPs)
chr7 (18-180)||(12221680-12221847)
[»] chr6 (2 HSPs)
chr6 (108-184)||(31239526-31239602)
chr6 (18-70)||(31239660-31239712)
[»] chr1 (2 HSPs)
chr1 (18-70)||(25038255-25038307)
chr1 (18-70)||(25043467-25043519)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 19050578 - 19050750
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgcttccataattgagtaccataacgggaaggaggcacatctgtattgcaa 117  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19050578 aaacatgtactctcactaacgtctctaacaagttgttactt-aacagaatgcttccataattgagtaccataacgggaaggaggaacatctgtattgcaa 19050676  T
Q  118 acttggcagctccctctcaacaaacatgtatcatgagctccttgctttggagtaatatgagggccttttcatct 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  19050677 acttggcagctccctctcaacaaacatgtatcatgagctccttgctttggagcaatatgagggcattttcatct 19050750  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 19051103 - 19051018
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgcttccataattgagtaccataacgggaaggaggca 103  Q
    ||||||||||||||||||| ||||||  ||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  19051103 aaacatgtactctcactaaggtctctggcaagttgttagtttaacagaatgcttccataattgaataccataacaggaaggaggca 19051018  T

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Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 5737758 - 5737587
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgcttccataattgagtaccataacgggaaggaggca------catctgta 111  Q
    ||||||||||||||||||| |||| |  ||| || ||| ||||| ||||||||||||||||||  ||| |||||  ||||||| ||      |||||| |    
T  5737758 aaacatgtactctcactaaggtctttgtcaagttattagtttaatagaatgcttccataattggatac-ataacacgaaggagacattgcaacatctgaa 5737660  T
Q  112 ttgcaaacttggcagctccctctcaacaaacatgtatcatgagctccttgctttggagtaatatgagggcctt 184  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  5737659 ttgcaaacttggcacctccctctcaataaacatgtatcatgagctccttgctttggagcaatacgagggcctt 5737587  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 41121931 - 41122007
Alignment:
Q  106 tctgtattgcaaacttggcagctccctctcaacaaacatgtatcatgagctccttgctttggagtaatatgagggcc 182  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  41121931 tctgtattgcaaacttggcagctccttctcaacaaccatgtatcataagctccttgctttggagcaatatgagggcc 41122007  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 5737246 - 5737323
Alignment:
Q  25 tactctcactaacgtctctaacaaattgttactttaacagaatgcttccataattgagtaccataacgggaaggaggc 102  Q
    |||||||||||| ||||||||||| ||||||  |||||| ||||||||||||||||| || |||||  ||||||||||    
T  5737246 tactctcactaatgtctctaacaagttgttaacttaacataatgcttccataattgaatagcataagaggaaggaggc 5737323  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5965167 - 5965115
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgct 70  Q
    ||||||||||||||||||| ||| || |||| |||||| ||||||| ||||||    
T  5965167 aaacatgtactctcactaaggtccctgacaagttgttagtttaacataatgct 5965115  T

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Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 12221680 - 12221847
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgcttccataattgagtaccataacgggaaggaggca------catctgta 111  Q
    ||||||||||||||||| |  | ||| |||| || ||| ||||||||||||||||||||||||| ||| ||||| ||||||||| |      ||| ||||    
T  12221680 aaacatgtactctcactgaaatttctgacaagttattagtttaacagaatgcttccataattgaatac-ataacaggaaggaggaattgcaacatatgta 12221778  T
Q  112 ttgcaaacttggcagctccctctcaacaaacatgtatcatgagctccttgctttggagtaatatgaggg 180  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||| ||||||||||    
T  12221779 ttgcaaacttggcagctccctcttaacaaacatgtatcgtgaactccttgcttaggagcaatatgaggg 12221847  T

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Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 31239602 - 31239526
Alignment:
Q  108 tgtattgcaaacttggcagctccctctcaacaaacatgtatcatgagctccttgctttggagtaatatgagggcctt 184  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  31239602 tgtattgcaaacttggcagctccctctcaacaaacttgtatcatgagctccttgctttggagcaataggagggcctt 31239526  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 31239712 - 31239660
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgct 70  Q
    |||||||||||||||||||  || |||| ||||||||| ||||||| ||||||    
T  31239712 aaacatgtactctcactaagatccctaaaaaattgttaatttaacaaaatgct 31239660  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 25038255 - 25038307
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgct 70  Q
    |||||||||||||| |||| ||| ||| ||| |||||| ||||||||||||||    
T  25038255 aaacatgtactctcgctaaggtccctagcaagttgttagtttaacagaatgct 25038307  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 25043467 - 25043519
Alignment:
Q  18 aaacatgtactctcactaacgtctctaacaaattgttactttaacagaatgct 70  Q
    |||||||||||||| |||| ||| ||| ||| |||||| ||||||||||||||    
T  25043467 aaacatgtactctcgctaaggtccctagcaagttgttagtttaacagaatgct 25043519  T

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