View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_high_7 (Length: 402)
Name: NF2930_high_7
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 385
Target Start/End: Complemental strand, 22460656 - 22460301
Alignment:
| Q |
29 |
tgcaatagatgataagttcaaaattgataagaaattgaaacaatatgtgtttattcatgctcatgaaaagtttggttatagtaagggggatcccgttaag |
128 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22460656 |
tgcaatagatgataagttcaaaatggataagaaattgaaacaatatgtgtttattcatgctcatgaaaagtttggttatagtaagggggattccgttaag |
22460557 |
T |
|
| Q |
129 |
aagaatattatcataaactgtgttgaagtcatgctaatttgagttctaagttaagaagttaaaaattaaattaaaaagcagacttaatattgaaaagata |
228 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
22460556 |
aagaaaattatcataaactgtgttgaagtcatgctaacttgagttctaagctaagaagttaaaaataaaattaaaagacagacttaatattgaaaagata |
22460457 |
T |
|
| Q |
229 |
actttaacgtattaaatgtataannnnnnnnnnnnnnnncttctacttttgatttcattgattgtatctttagggtacaagataacattttctatcgttt |
328 |
Q |
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||||||| |||||||||||| || ||| ||| |||||||||||| ||||| ||||||||| |||||||||||| ||||||||||| |
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| T |
22460456 |
actttaatgtattaaatgtacaa--tttttgaaaaaaaacttttacatttgatttcattaattgtgtctttagggcacaagataacatcttctatcgttt |
22460359 |
T |
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| Q |
329 |
aatttctgatactatttcataaatacc-aaaccattgaagattttgataatgtttaga |
385 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
22460358 |
aatttctgatactatttcatgaataccaaaaccattgaagattttgataatgtttaga |
22460301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 385
Target Start/End: Complemental strand, 22483626 - 22483282
Alignment:
| Q |
37 |
atgataagttcaaaattgataagaaattgaaacaatatgtgtttattcatgctcatgaaaagtttggttatagtaagggggatcccgttaagaagaatat |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| || |
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| T |
22483626 |
atgataagttcaaaattgataagaaattgaaacaatatgtgtttattcatgctcatgctaa--ttggttatagtaagggggatcccgttgagaagaaaat |
22483529 |
T |
|
| Q |
137 |
tatcataaactgtgttgaagtcatgctaatt---tgagttctaagttaagaagttaaaaattaaattaaaaagcagacttaatattgaaaagataacttt |
233 |
Q |
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||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||| |
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| T |
22483528 |
tatcataaagtgtgttggagtcatgctaagtacttgagttctaagttaagaagttaaaaataaaattaaaaggcaaacttaatattgaaaagataatttt |
22483429 |
T |
|
| Q |
234 |
aacgtattaaatgtataannnnnnnnnnnnnnnncttctacttttgatttcattgattgtatctttagggtacaagataacattttctatcgtttaattt |
333 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
22483428 |
aacgtattaaatgtacaa--tttttttttaaaaacttctacttttgatttcattgattgtgtctttagggaacaagataacattttctatcgtttaattt |
22483331 |
T |
|
| Q |
334 |
ctgatactatttcataaataccaaaccattgaagattttgataatgtttaga |
385 |
Q |
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||| |||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
22483330 |
ttga---tatttcatgaaaaccaaaccattgaagattttgataatgtttaga |
22483282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 21191023 - 21190966
Alignment:
| Q |
176 |
aagttaagaagttaaaaattaaattaaaaagcagacttaatattgaaaagataacttt |
233 |
Q |
| |
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||||||||||| ||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
21191023 |
aagttaagaaggtaaaaatgaaattaaaagacaaacttaatattgaaaagataacttt |
21190966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 27247282 - 27247225
Alignment:
| Q |
176 |
aagttaagaagttaaaaattaaattaaaaagcagacttaatattgaaaagataacttt |
233 |
Q |
| |
|
||||||||||| ||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
27247282 |
aagttaagaaggtaaaaataaaattaaaagacaaacttaatattgaaaagataacttt |
27247225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 37209943 - 37209886
Alignment:
| Q |
176 |
aagttaagaagttaaaaattaaattaaaaagcagacttaatattgaaaagataacttt |
233 |
Q |
| |
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||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| |
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| T |
37209943 |
aagttaagaagctaaaaatggaattaaaagacaaacttaatattgaaaagataacttt |
37209886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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