View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2930_low_12 (Length: 386)

Name: NF2930_low_12
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2930_low_12
NF2930_low_12
[»] chr4 (28 HSPs)
chr4 (19-379)||(29283130-29283490)
chr4 (274-379)||(10142021-10142127)
chr4 (274-379)||(52458895-52459000)
chr4 (274-379)||(52460152-52460257)
chr4 (275-369)||(51758330-51758426)
chr4 (250-379)||(9921971-9922099)
chr4 (274-379)||(22594155-22594262)
chr4 (78-141)||(49242563-49242626)
chr4 (78-140)||(14192702-14192764)
chr4 (78-142)||(51337307-51337371)
chr4 (196-379)||(1843278-1843463)
chr4 (310-379)||(9900182-9900251)
chr4 (310-379)||(13957165-13957234)
chr4 (80-141)||(17647958-17648019)
chr4 (76-137)||(56367272-56367333)
chr4 (78-142)||(14033711-14033775)
chr4 (78-138)||(28143836-28143896)
chr4 (78-142)||(38052595-38052659)
chr4 (78-141)||(39480650-39480714)
chr4 (317-379)||(6261701-6261764)
chr4 (274-379)||(39480371-39480477)
chr4 (274-371)||(36213613-36213709)
chr4 (78-139)||(10373770-10373831)
chr4 (273-348)||(25200907-25200984)
chr4 (78-137)||(10095425-10095485)
chr4 (276-378)||(41509314-41509416)
chr4 (274-322)||(42513869-42513917)
chr4 (233-305)||(55520223-55520294)
[»] chr2 (34 HSPs)
chr2 (164-371)||(9057169-9057376)
chr2 (213-379)||(19091303-19091472)
chr2 (289-375)||(14903917-14904004)
chr2 (274-379)||(22576104-22576210)
chr2 (274-365)||(30386730-30386823)
chr2 (257-374)||(13597999-13598118)
chr2 (274-379)||(38566319-38566424)
chr2 (281-381)||(19685679-19685779)
chr2 (76-142)||(90711-90777)
chr2 (78-140)||(2565275-2565337)
chr2 (309-379)||(31549205-31549275)
chr2 (249-379)||(41302567-41302694)
chr2 (78-142)||(45277863-45277927)
chr2 (249-338)||(21573840-21573931)
chr2 (78-140)||(9912989-9913050)
chr2 (95-141)||(14903698-14903744)
chr2 (78-140)||(18781561-18781623)
chr2 (310-379)||(6882914-6882982)
chr2 (78-142)||(7880710-7880774)
chr2 (78-142)||(18582940-18583004)
chr2 (78-137)||(9057056-9057115)
chr2 (78-141)||(24484160-24484223)
chr2 (274-379)||(33015313-33015419)
chr2 (76-141)||(19685437-19685503)
chr2 (95-141)||(22576378-22576424)
chr2 (76-142)||(38696796-38696862)
chr2 (202-299)||(7880521-7880618)
chr2 (78-138)||(44314441-44314502)
chr2 (78-138)||(44322620-44322681)
chr2 (202-299)||(45277677-45277774)
chr2 (78-137)||(2553702-2553762)
chr2 (308-379)||(11199405-11199477)
chr2 (78-142)||(25472642-25472706)
chr2 (78-141)||(33015590-33015654)
[»] chr7 (25 HSPs)
chr7 (160-378)||(35118367-35118587)
chr7 (246-379)||(47522476-47522607)
chr7 (196-371)||(8114040-8114217)
chr7 (274-379)||(24442047-24442153)
chr7 (245-364)||(28460364-28460486)
chr7 (78-142)||(19312324-19312388)
chr7 (309-379)||(5770790-5770861)
chr7 (274-379)||(43179544-43179650)
chr7 (76-142)||(48238114-48238180)
chr7 (274-381)||(31072642-31072750)
chr7 (77-141)||(37549171-37549235)
chr7 (78-142)||(48636360-48636424)
chr7 (274-379)||(8389419-8389525)
chr7 (78-141)||(31072925-31072988)
chr7 (274-355)||(8604737-8604818)
chr7 (78-142)||(135357-135421)
chr7 (273-379)||(4539743-4539850)
chr7 (78-138)||(8069234-8069294)
chr7 (78-141)||(8389696-8389760)
chr7 (78-142)||(15680104-15680168)
chr7 (78-141)||(18667012-18667076)
chr7 (75-141)||(4539509-4539576)
chr7 (78-137)||(10016130-10016189)
chr7 (78-139)||(13753759-13753821)
chr7 (280-338)||(21863482-21863540)
[»] chr3 (28 HSPs)
chr3 (166-379)||(40145236-40145450)
chr3 (161-364)||(1424457-1424667)
chr3 (231-361)||(16877013-16877143)
chr3 (197-364)||(30191302-30191468)
chr3 (78-142)||(1424344-1424408)
chr3 (273-355)||(10993216-10993298)
chr3 (280-378)||(47184849-47184948)
chr3 (196-374)||(12892848-12893027)
chr3 (274-379)||(19156971-19157077)
chr3 (78-140)||(6025144-6025206)
chr3 (75-141)||(9467854-9467919)
chr3 (78-142)||(23045258-23045322)
chr3 (78-142)||(31885331-31885395)
chr3 (249-369)||(4127186-4127307)
chr3 (274-378)||(25071521-25071626)
chr3 (76-141)||(33443197-33443262)
chr3 (274-381)||(53077086-53077193)
chr3 (78-141)||(19156736-19156800)
chr3 (248-372)||(44663451-44663574)
chr3 (274-379)||(52448021-52448127)
chr3 (287-352)||(17147146-17147212)
chr3 (77-138)||(30191571-30191632)
chr3 (78-142)||(1420189-1420253)
chr3 (78-142)||(22917793-22917857)
chr3 (78-141)||(25071278-25071342)
chr3 (78-141)||(27941912-27941976)
chr3 (78-142)||(30376917-30376981)
chr3 (78-122)||(36640723-36640767)
[»] chr5 (26 HSPs)
chr5 (161-379)||(6769480-6769699)
chr5 (160-379)||(38915834-38916064)
chr5 (274-378)||(9409673-9409778)
chr5 (274-381)||(18888946-18889054)
chr5 (78-141)||(43324104-43324167)
chr5 (274-378)||(42879473-42879578)
chr5 (213-379)||(16686802-16686970)
chr5 (77-142)||(38490701-38490766)
chr5 (78-141)||(13490034-13490098)
chr5 (78-141)||(13382999-13383062)
chr5 (309-372)||(13820995-13821057)
chr5 (274-379)||(23962728-23962834)
chr5 (79-138)||(29149296-29149355)
chr5 (277-355)||(40583528-40583606)
chr5 (277-372)||(20892394-20892490)
chr5 (78-141)||(2676608-2676672)
chr5 (274-379)||(2676843-2676949)
chr5 (78-137)||(7849977-7850036)
chr5 (310-379)||(16040306-16040376)
chr5 (280-326)||(29789248-29789294)
chr5 (280-364)||(37134672-37134757)
chr5 (77-141)||(39537781-39537846)
chr5 (78-141)||(5579002-5579066)
chr5 (95-139)||(18888729-18888773)
chr5 (78-122)||(41869418-41869462)
chr5 (78-137)||(42879239-42879299)
[»] chr1 (22 HSPs)
chr1 (273-377)||(48646030-48646136)
chr1 (274-379)||(12027664-12027771)
chr1 (281-381)||(48999290-48999389)
chr1 (274-355)||(24185806-24185887)
chr1 (274-364)||(9023093-9023183)
chr1 (78-141)||(22070145-22070209)
chr1 (78-142)||(36296358-36296422)
chr1 (78-142)||(42721895-42721959)
chr1 (77-140)||(26221340-26221403)
chr1 (274-381)||(5049333-5049441)
chr1 (319-376)||(12784092-12784149)
chr1 (274-381)||(21906257-21906365)
chr1 (78-142)||(1347103-1347167)
chr1 (78-141)||(5049096-5049160)
chr1 (78-142)||(32179174-32179238)
chr1 (81-141)||(34307845-34307905)
chr1 (308-364)||(49229471-49229527)
chr1 (75-141)||(21906018-21906085)
chr1 (274-379)||(22070381-22070487)
chr1 (332-379)||(48596472-48596519)
chr1 (274-378)||(34307567-34307672)
chr1 (78-138)||(28946200-28946260)
[»] chr6 (23 HSPs)
chr6 (280-338)||(19107821-19107880)
chr6 (274-379)||(1422833-1422939)
chr6 (274-379)||(34043422-34043528)
chr6 (217-378)||(11680978-11681143)
chr6 (247-340)||(30359546-30359642)
chr6 (77-140)||(14677385-14677448)
chr6 (247-379)||(30358728-30358865)
chr6 (79-138)||(18674997-18675057)
chr6 (310-372)||(3229318-3229381)
chr6 (77-137)||(20990099-20990160)
chr6 (78-142)||(31475155-31475219)
chr6 (78-142)||(33516976-33517040)
chr6 (274-379)||(1603248-1603354)
chr6 (76-141)||(21442391-21442457)
chr6 (77-141)||(1131415-1131480)
chr6 (78-138)||(1603013-1603074)
chr6 (311-379)||(13758897-13758966)
chr6 (278-331)||(15060050-15060102)
chr6 (78-138)||(22012514-22012575)
chr6 (202-299)||(33516788-33516885)
chr6 (78-142)||(9534313-9534376)
chr6 (85-137)||(12269066-12269118)
chr6 (78-141)||(34043181-34043245)
[»] chr8 (17 HSPs)
chr8 (249-375)||(35824029-35824156)
chr8 (274-379)||(45117344-45117450)
chr8 (274-378)||(31597399-31597505)
chr8 (274-371)||(7973109-7973207)
chr8 (274-378)||(16729609-16729713)
chr8 (78-142)||(6927919-6927983)
chr8 (274-370)||(9382354-9382453)
chr8 (78-139)||(31597165-31597226)
chr8 (317-378)||(32073182-32073242)
chr8 (78-141)||(3762339-3762403)
chr8 (78-142)||(11995095-11995159)
chr8 (308-379)||(9137447-9137518)
chr8 (78-139)||(1981234-1981296)
chr8 (77-141)||(7973378-7973443)
chr8 (202-299)||(28509072-28509169)
chr8 (78-138)||(45117137-45117198)
chr8 (106-142)||(28508944-28508980)
[»] scaffold0601 (1 HSPs)
scaffold0601 (77-141)||(6427-6492)
[»] scaffold0116 (2 HSPs)
scaffold0116 (78-142)||(40460-40524)
scaffold0116 (274-346)||(40694-40768)
[»] scaffold0065 (1 HSPs)
scaffold0065 (81-140)||(65985-66044)
[»] scaffold1266 (1 HSPs)
scaffold1266 (310-379)||(1225-1297)
[»] scaffold0002 (1 HSPs)
scaffold0002 (275-377)||(119468-119572)
[»] scaffold0093 (2 HSPs)
scaffold0093 (249-381)||(50781-50914)
scaffold0093 (74-141)||(50561-50629)
[»] scaffold0016 (8 HSPs)
scaffold0016 (277-379)||(87753-87855)
scaffold0016 (277-379)||(88227-88331)
scaffold0016 (93-141)||(88503-88551)
scaffold0016 (277-379)||(88703-88807)
scaffold0016 (93-141)||(88979-89027)
scaffold0016 (277-379)||(89179-89282)
scaffold0016 (95-141)||(88027-88073)
scaffold0016 (78-141)||(89453-89517)
[»] scaffold0743 (1 HSPs)
scaffold0743 (79-136)||(3684-3741)
[»] scaffold0308 (1 HSPs)
scaffold0308 (78-141)||(12486-12550)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 29283490 - 29283130
Alignment:
Q  19 agttgaggtatgatggtttgtattattattatgattcgtctactattaaagtacaagagcagggccggccctatgtataggccgtgggtgcgacggccta 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29283490 agttgaggtatgatggtttgtatcattattatgattcgtctactattaaagtacaagagcagggccggccctatgcataggccgtgggtgcgacggccta 29283391  T
Q  119 gggctcttgccggtagggggccctnnnnnnnttttcgaaaggggggtgtgtatagtaatgtttactgaaaggcccaaacatgttgaaaggctgtgctgaa 218  Q
    |||| ||||||||||||||| |||        || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29283390 gggcccttgccggtagggggtccttaaaaaaattacgaaaggggggtgtgtatagtaatgtttactgaaaggcccaaacatgttgaaaggctgtgctgaa 29283291  T
Q  219 gtctgttaaagttatggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggttttt 318  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29283290 gtctgttaaagttatggcccttttgtctcaatttgctatatatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggttttt 29283191  T
Q  319 cttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29283190 cttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggccctttg 29283130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 10142021 - 10142127
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgcc-aaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||| ||||||||||||| || |||| ||||   ||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||     
T  10142021 acaaagatttctatatacatccaccctttaaaaagtttggttgttcttaataatgtgccaaaaaaattattatcgaagaaattgatgatatttttttgga 10142120  T
Q  373 ccctttg 379  Q
    |||||||    
T  10142121 ccctttg 10142127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 52458895 - 52459000
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||| ||||||||||||||||||| |||||     |||||| ||||||||||||||| |||||| |||| |||||| |||||| ||||||| |||||||    
T  52458895 acaaacatttctatatacaccctcc-tataataaaattggttgttcttaataatgtgctcaaaaatttatcatcgaagaaatttgtgatatttttttggg 52458993  T
Q  373 ccctttg 379  Q
    |||||||    
T  52458994 ccctttg 52459000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 52460152 - 52460257
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||| ||||||||||||||||||| |||||     |||||| ||||||||||||||| |||||| |||| |||||| |||||| ||||||| |||||||    
T  52460152 acaaacatttctatatacaccctcc-tataataaaattggttgttcttaataatgtgctcaaaaatttatcatcgaagaaatttgtgatatttttttggg 52460250  T
Q  373 ccctttg 379  Q
    |||||||    
T  52460251 ccctttg 52460257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 369
Target Start/End: Original strand, 51758330 - 51758426
Alignment:
Q  275 caaaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgccaaaaaa-ttattatcgaataaatttatgatattatttt 369  Q
    |||| ||||||||||||||||||||||||||     || ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||    
T  51758330 caaagatttctatatacaccctccctataaaaaaaattagttgttcttaataatgtgccaaaaaatttattatcgaagaaatttgtgatattctttt 51758426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 9922099 - 9921971
Alignment:
Q  250 tttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaattattatcga 348  Q
    |||| ||||||||| | | ||||| ||||| ||||||||||||||| ||||||||||    |||||||||||||||||||||  ||||||||||||| |     
T  9922099 tttgctatatataccctcgtataacacaaagatttctatatacaccatccctataaaaaaattggtttttcttaataatgtg--aaaaaattattatggg 9922002  T
Q  349 ataaatttatgatattattttgggccctttg 379  Q
    | ||||| |  ||||| |||||| |||||||    
T  9922001 agaaattgactatatttttttggaccctttg 9921971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 22594155 - 22594262
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgcc-aaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||| ||| ||||||     ||||||||||||||||||||||| ||||| ||||||||||| ||||| | |||||| ||||||    
T  22594155 acaaagatttctatatacaccttccttataaaaaaaattggtttttcttaataatgtgcctaaaaatttattatcgaagaaattgacgatatttttttgg 22594254  T
Q  372 gccctttg 379  Q
    ||| ||||    
T  22594255 gccttttg 22594262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 49242563 - 49242626
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| |||||| |||||||||||    
T  49242563 cagggccggccctaggcataggccgggagtgcgacggcctagggcccttgcccgtagggggccc 49242626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 14192764 - 14192702
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||||||||||||||    
T  14192764 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 14192702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 51337307 - 51337371
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  51337307 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 51337371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 379
Target Start/End: Complemental strand, 1843463 - 1843278
Alignment:
Q  196 acatgttgaaaggctgtgctgaagtctgttaaagttatggcc-cttttgtctcaatttgttatatatacacccttataa-acaaaaatttctatatacac 293  Q
    ||||| || ||||||| ||| ||||||||||| ||| | | | |||||| ||  ||||||||||||||| |   ||||| ||||| ||||||||||||||    
T  1843463 acatgatggaaggctgggctcaagtctgttaatgttttagactcttttggctagatttgttatatatactcttatataacacaaagatttctatatacac 1843364  T
Q  294 cctccctataaatgttttggtttttcttaataatgt-gccaaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    | ||||||||||    |||||||||||||||||| |  | ||||||||||||| | | |||||   |||||| ||||||||||||||    
T  1843363 catccctataaa-aaattggtttttcttaataatatatcaaaaaaattattatgggagaaattagagatatttttttgggccctttg 1843278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 9900251 - 9900182
Alignment:
Q  310 ttggtttttcttaataatgtgccaaaaaa-ttattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||| ||||||||||||||||| |||||| ||||||||||| ||||| |||||||| ||||||| ||||||    
T  9900251 ttgggttttcttaataatgtgctaaaaaaattattatcgaagaaattgatgatatt-ttttgggtcctttg 9900182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 13957165 - 13957234
Alignment:
Q  310 ttggtttttcttaataatgtgcca-aaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||| ||||||||||||||| | |||||||||||||||| |||||  ||||||| ||||||||||||||    
T  13957165 ttggttgttcttaataatgtgctagaaaaattattatcgaagaaattagtgatatt-ttttgggccctttg 13957234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 17648019 - 17647958
Alignment:
Q  80 gggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||| | |||||||| | ||||||||||||| ||| |||||| |||||||||||    
T  17648019 gggccggccctaggcataggccgggagtgcgacggcctacggcccttgcccgtagggggccc 17647958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 56367333 - 56367272
Alignment:
Q  76 agcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    |||||||||||||||| | ||||||||  |||||||||||||||||| | |||| |||||||    
T  56367333 agcagggccggccctaggcataggccggaggtgcgacggcctagggcccatgcccgtagggg 56367272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 14033775 - 14033711
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||  ||||||||||||    
T  14033775 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgctcgtagggggccct 14033711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 28143896 - 28143836
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||    
T  28143896 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtaggggg 28143836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 38052595 - 38052659
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||||||||||||||||  | |||| ||||||||||||    
T  38052595 cagggccggccctaggcataggccgcgagtgcgacggcctaggggccatgcccgtagggggccct 38052659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 39480714 - 39480650
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||||||    
T  39480714 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggccc 39480650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 6261764 - 6261701
Alignment:
Q  317 ttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    ||||||||||| ||| |||||| ||| ||||||||||||| |||||||| ||||||| ||||||    
T  6261764 ttcttaataatatgctcaaaaatttactatcgaataaattaatgatatttttttgggtcctttg 6261701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 39480477 - 39480371
Alignment:
Q  274 acaaaaatttctatatacaccctccctataa-atgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||| |||| ||  | |||||||| ||||||||||| ||| |||||| |||||||| || ||||  |||||||| ||||||    
T  39480477 acaaatatttctatatacaccct-cctacaattttttttggttgttcttaataatatgctcaaaaatttattatcaaagaaataaatgatatttttttgg 39480379  T
Q  372 gccctttg 379  Q
    | ||||||    
T  39480378 gtcctttg 39480371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 36213613 - 36213709
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||| ||||| ||| ||||  || ||||||||||| ||| |||||  ||||||||||| ||||| |||||||| ||||||    
T  36213613 acaaatatttctatatacaccct-cctat-aattttttttttgttcttaataatatgctcaaaattttattatcgaagaaattaatgatatttttttgg 36213709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 10373831 - 10373770
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggc 139  Q
    |||||||||||||  | |||||||  |||||||||| |||||||| | ||||||||||||||    
T  10373831 cagggccggccctcggcataggcctggggtgcgacgacctagggcccatgccggtagggggc 10373770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 25200907 - 25200984
Alignment:
Q  273 aacaaaaatttctatatacaccctccctataaat-gttttggtttttcttaataatgtg-ccaaaaaattattatcga 348  Q
    |||||| ||||||||||||||||||| |||||||   |||| || ||||||| |||||| | ||||||||||||||||    
T  25200907 aacaaatatttctatatacaccctccatataaataaatttgtttgttcttaacaatgtgtcaaaaaaattattatcga 25200984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 10095485 - 10095425
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||    
T  10095485 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 10095425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 378
Target Start/End: Complemental strand, 41509416 - 41509314
Alignment:
Q  276 aaaaatttctatatacaccctccctataaatgttttggttt-ttcttaataatgtgccaaaa-aattattatcgaataaatttatgatattattttgggc 373  Q
    ||||| || |||||||||||||||| | ||||||||  ||| ||||||||||| |||||||| ||||||| ||||| |||||  ||||||| |||||||     
T  41509416 aaaaaattatatatacaccctccct-ttaatgtttttttttcttcttaataatctgccaaaacaattattctcgaagaaattggtgatatt-ttttggga 41509319  T
Q  374 ccttt 378  Q
    |||||    
T  41509318 ccttt 41509314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 42513917 - 42513869
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttctta 322  Q
    ||||| ||||||||||||||| |||||| |||| |||||||| ||||||    
T  42513917 acaaatatttctatatacaccttccctacaaattttttggttgttctta 42513869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 55520294 - 55520223
Alignment:
Q  233 tggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccctataaa 305  Q
    |||||||||||| |||||||  ||| ||||  ||| |||| ||||| ||||||||||||| ||||||||||||    
T  55520294 tggcccttttgtttcaattttctatgtatatccccgtatatacaaagatttctatataca-cctccctataaa 55520223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 164 - 371
Target Start/End: Original strand, 9057169 - 9057376
Alignment:
Q  164 gtgtgtatagtaatgtttactgaaaggcccaaacatgttgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgttatatatac 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  9057169 gtgtgtatagtaatgtttactgaaaggcccaaacatgttgaaaggctgtgctgaagtctgttaatgttatggcccttttgtctcaatttgctatatatac 9057268  T
Q  264 acccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatat 363  Q
    |||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  9057269 acccttttatacaaagatttctatatacaccctccctataaattttttggtttttcttaatattgtgccaaaatattattatcgaataaatttatgatat 9057368  T
Q  364 tattttgg 371  Q
    | ||||||    
T  9057369 ttttttgg 9057376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 379
Target Start/End: Complemental strand, 19091472 - 19091303
Alignment:
Q  213 gctgaagtctgttaa-agttatggcccttttgtctcaatttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgttt 310  Q
    ||||||||||||||| | || ||||  ||||| | ||||||  ||||||||| ||| ||||  ||||| ||||||||||||||| |  ||||| |   ||    
T  19091472 gctgaagtctgttaatatttttggcgattttggcacaattttctatatatacccccgtatagcacaaatatttctatatacaccattactatagaaaatt 19091373  T
Q  311 tggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgggccctttg 379  Q
    ||||| |||||||||||||| ||||||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  19091372 tggttgttcttaataatgtgtcaaaaaatttattatcgaaaaaattgatgatatttttttgggccctttg 19091303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 289 - 375
Target Start/End: Original strand, 14903917 - 14904004
Alignment:
Q  289 tacaccctccctataaatgttttggtttttcttaataatgtgccaaaa-aattattatcgaataaatttatgatattattttgggccc 375  Q
    |||||||||||||||||    |||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  14903917 tacaccctccctataaaaaaattggttgttcttaataatgtgccaaaaaaattattatcgaagaaatttgtgatatttttttgggccc 14904004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 22576210 - 22576104
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||| | |||| |||| ||||||||||| ||| |||||| ||||||||||| ||||| |||||||| ||||||    
T  22576210 acaaatatttctatatacaccctcc-tataattatttttggttgttcttaataatatgctcaaaaatttattatcgaagaaattaatgatatttttttgg 22576112  T
Q  372 gccctttg 379  Q
    ||||||||    
T  22576111 gccctttg 22576104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 30386730 - 30386823
Alignment:
Q  274 acaaaaatttctatatacaccctccctata-aatgttttggtttttcttaataatgtgccaaaaaat-tattatcgaataaatttatgatatta 365  Q
    |||||| ||||||||||||||||||||||| || | ||||||| |||||||||||||||||||| || |||||| ||| |||||| ||||||||    
T  30386730 acaaaattttctatatacaccctccctatacaaagatttggttgttcttaataatgtgccaaaatatatattattgaagaaatttgtgatatta 30386823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 13598118 - 13597999
Alignment:
Q  257 tatatacaccct-tataaacaaaaatttctatatacaccctccctataaatg-ttttggtttttcttaataatgtgccaaaaaa-ttattatcgaataaa 353  Q
    |||||||||||  |||| ||||| |||||||||||||||||||||||||| |  | ||||| || ||||||||||||||||||| ||||||||||| |||    
T  13598118 tatatacaccccgtatatacaaatatttctatatacaccctccctataaaagactctggttgtttttaataatgtgccaaaaaatttattatcgaa-aaa 13598020  T
Q  354 tttatgatattattttgggcc 374  Q
    ||  ||||||| |||||||||    
T  13598019 ttggtgatatttttttgggcc 13597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 38566424 - 38566319
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtg-ccaaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||| ||||||||||||||||||||||||||    || |||||||||||||||||| | ||||||||||||||||| |||||   |||||| |||||||    
T  38566424 acaaagatttctatatacaccctccctataaaaaaatt-gtttttcttaataatgtgtcaaaaaaattattatcgaagaaattagcgatatttttttggg 38566326  T
Q  373 ccctttg 379  Q
    || ||||    
T  38566325 ccatttg 38566319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 19685679 - 19685779
Alignment:
Q  281 tttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||||||||||||||| ||||||   ||||||| ||||| ||||| ||| |||||||| ||||||||| |||||  ||||||| ||||||||||||||    
T  19685679 tttctatatacaccctcc-tataaaaaatttggttgttcttgataatatgctaaaaaatttattatcgaagaaattggtgatatttttttgggccctttg 19685777  T
Q  380 ct 381  Q
    ||    
T  19685778 ct 19685779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 90777 - 90711
Alignment:
Q  76 agcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  90777 agcagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 90711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 2565275 - 2565337
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||||||||||||||    
T  2565275 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 2565337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 379
Target Start/End: Complemental strand, 31549275 - 31549205
Alignment:
Q  309 tttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    ||||||| ||||||||||||||| ||||||||||||| ||| |||||  ||||||| ||||||||| ||||    
T  31549275 tttggttgttcttaataatgtgcaaaaaaattattattgaagaaattggtgatatttttttgggccatttg 31549205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 41302694 - 41302567
Alignment:
Q  249 atttgttatatatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaa-ttattatcg 347  Q
    ||||| ||||||||| | | |||||||| | |||| ||||   ||||||||||||||   |||| |||||||| |||||||||||||||| |||||||||    
T  41302694 atttgctatatataccctcatataaacagagatttttata---accctccctataaaaaatttgatttttctttataatgtgccaaaaaatttattatcg 41302598  T
Q  348 aataaatttatgatattattttgggccctttg 379  Q
    || ||||||  |||||| ||| ||||||||||    
T  41302597 aagaaatttgcgatatt-tttagggccctttg 41302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 45277927 - 45277863
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  45277927 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 45277863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 21573840 - 21573931
Alignment:
Q  249 atttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgccaaaaaa 338  Q
    ||||||||||| ||| ||| ||||  ||||| ||||||||||||||||||||| ||||    ||||||| ||||||||||||||||||||||    
T  21573840 atttgttatatgtacccccgtatagcacaaagatttctatatacaccctccctgtaaaaaaatttggttgttcttaataatgtgccaaaaaa 21573931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 9912989 - 9913050
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    |||||||||||||| | ||||||| |||||||||||||||||||| | |||| ||||||||||    
T  9912989 cagggccggccctacgaataggccatgggtgcgacggcctagggc-catgcccgtagggggcc 9913050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 14903698 - 14903744
Alignment:
Q  95 ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  14903698 ataggccgggggtgcgacggcctatggcccttgccggtagggggccc 14903744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 18781623 - 18781561
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||    
T  18781623 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggcc 18781561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 6882914 - 6882982
Alignment:
Q  310 ttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||| |||||||||||||||||||||| ||||||| || |||||  ||||||| ||||||||| ||||    
T  6882914 ttggttgttcttaataatgtgccaaaaaaatattatcaaagaaattggtgatatt-ttttgggccatttg 6882982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 7880774 - 7880710
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | ||||| |||||||||||    
T  7880774 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccgttagggggccct 7880710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 18583004 - 18582940
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||  ||||||||||||    
T  18583004 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgctcgtagggggccct 18582940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 9057056 - 9057115
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    ||||||||| |||| | |||||||| |||||||||||||||  || ||||||||||||||    
T  9057056 cagggccggacctaggcataggccgggggtgcgacggcctactgcccttgccggtagggg 9057115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 24484160 - 24484223
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| | |||| ||| ||||||||||||||||||| | ||||  ||||||||||    
T  24484160 cagggccggccctaggcatagtccgggggtgcgacggcctagggcccatgccattagggggccc 24484223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 33015419 - 33015313
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||||    |||| || ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  33015419 acaaatatttctatatacaccctcc-tataaaaaaatttgcttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 33015321  T
Q  372 gccctttg 379  Q
    ||||||||    
T  33015320 gccctttg 33015313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 19685437 - 19685503
Alignment:
Q  76 agcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||||| |  |||||||| | ||||||||||||||||| | |||||||||| |||||    
T  19685437 agcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggaggccc 19685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 22576424 - 22576378
Alignment:
Q  95 ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||| || ||||||||||||||||| | ||||||||||||||||    
T  22576424 ataggccatgagtgcgacggcctagggcccatgccggtagggggccc 22576378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 38696796 - 38696862
Alignment:
Q  76 agcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||||| | |||||| | | ||||||||||||||||| | |||  ||||||||||||    
T  38696796 agcagggccggccctaggcataggctgcgagtgcgacggcctagggcccatgctcgtagggggccct 38696862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 7880618 - 7880521
Alignment:
Q  202 tgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccc 299  Q
    ||||| |||| |||| |||||||||  ||| ||||| |||||   ||||||| ||||||||| || | | |||||||  |||||||||||||||||||    
T  7880618 tgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctatatacaccctccc 7880521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 44314502 - 44314441
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | |||||||||||||    
T  44314502 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 44314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 44322681 - 44322620
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | |||||||||||||    
T  44322681 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 44322620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 45277774 - 45277677
Alignment:
Q  202 tgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccc 299  Q
    ||||| |||| |||| |||||||||  ||| ||||| |||||   ||||||| ||||||||| || | | |||||||  |||||||||||||||||||    
T  45277774 tgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctatatacaccctccc 45277677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 2553702 - 2553762
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    |||||||||||||| |  |||||||  | ||||||||||||||||| ||||||||||||||    
T  2553702 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtagggg 2553762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 11199477 - 11199405
Alignment:
Q  308 ttttggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgggccctttg 379  Q
    |||| ||| ||||||||||| ||| |||||||| ||||||||| |||||  ||||||| ||||||||| ||||    
T  11199477 tttttgttgttcttaataatatgctaaaaaatttattatcgaagaaattagtgatatttttttgggccttttg 11199405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 25472706 - 25472642
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||||| |||| ||||||||||| || |||  ||||||| ||||    
T  25472706 cagggccggccctaggcataggccgtgagtgcaacggcctaggggtcatgcacgtaggggtccct 25472642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 33015654 - 33015590
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||| ||||||||||||| | ||||||||||||||||    
T  33015654 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggccc 33015590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 160 - 378
Target Start/End: Complemental strand, 35118587 - 35118367
Alignment:
Q  160 gggggtgtgtatagtaatgtttactgaaaggcccaaacatgttgaaaggctgtgctgaagtctgttaaagtt-atggcccttttgtctcaatttgttata 258  Q
    ||||||||||||||  | |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  35118587 gggggtgtgtatagataagtttactgaaaggcccaaacttgttgaaaggctgtgctgaagactgttaatgtttatggcccttttgtctcaatttgttata 35118488  T
Q  259 tatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaa-aaaattattatcgaataaattta 357  Q
    | |||  ||||||| ||||| |||||||||||||| |||||||||||  |||| |||||||||||||||||||||| |||||||||||| |||| ||||     
T  35118487 tgtacttccttatatacaaagatttctatatacactctccctataaaatttttagtttttcttaataatgtgccaaaaaaattattatccaatacatttg 35118388  T
Q  358 tgatattattttgggcccttt 378  Q
    ||||||| |||||||||||||    
T  35118387 tgatatttttttgggcccttt 35118367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 379
Target Start/End: Complemental strand, 47522607 - 47522476
Alignment:
Q  246 tcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaa-aattatta 344  Q
    |||||||| ||||||||  |||||||| |||||  ||||| |||||||||||||||||| | ||||  |||||| |||||||||||||||| |||||| |    
T  47522607 tcaatttgctatatatatccccttatatacaaa--tttctgtatacaccctccctataatttttttactttttcgtaataatgtgccaaaacaattatca 47522510  T
Q  345 tcgaataaatttatgatattattttgggccctttg 379  Q
    |||||||||||| ||||||| ||||||||| ||||    
T  47522509 tcgaataaatttgtgatatt-ttttgggccatttg 47522476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 371
Target Start/End: Complemental strand, 8114217 - 8114040
Alignment:
Q  196 acatgttgaaaggctgtgctgaagtctgttaaagttat-ggcccttttgtctcaatttgttatatatacacccttataa-acaaaaatttctatatacac 293  Q
    ||||| |||| ||||  ||||||||||||||| ||| | |||||||||  | ||||||| ||||| ||| |||| |||| ||||| ||||||||||||||    
T  8114217 acatgatgaagggcttggctgaagtctgttaatgtttttggcccttttagcacaatttgctatatgtaccccct-ataacacaaagatttctatatacac 8114119  T
Q  294 cctccctataaatgttttggtttttcttaataatgtgccaaaaaa-ttattatcgaataaatttatgatattattttgg 371  Q
      | ||||||||    |||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||||||    
T  8114118 atttcctataaaaaaattggttgttcttaataatgtgccaaaaaaattattatcgaataaattggtgatatttttttgg 8114040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 24442153 - 24442047
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||||||||||||||||| ||||||||||||    || || | ||||||||||||||||||||||| |||||| || |||||  ||||||| |||||||    
T  24442153 acaaaaatttctatatacatcctccctataaaaaaattcgggtgttcttaataatgtgccaaaaaataattatcaaagaaattgttgatatttttttggg 24442054  T
Q  373 ccctttg 379  Q
     ||||||    
T  24442053 tcctttg 24442047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 364
Target Start/End: Complemental strand, 28460486 - 28460364
Alignment:
Q  245 ctcaatttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgccaa-aaaatta 341  Q
    ||||||||| ||||||||| ||| | ||  |||| |||||||||||||||| ||||| ||||    ||||||| |||||||||||||||||| |||||||    
T  28460486 ctcaatttgctatatatacccccgtttagcacaacaatttctatatacaccttccctttaaacaaatttggttgttcttaataatgtgccaaaaaaatta 28460387  T
Q  342 ttatcgaataaatttatgatatt 364  Q
    |||||||| ||||| ||||||||    
T  28460386 ttatcgaagaaattaatgatatt 28460364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 19312388 - 19312324
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||||| ||||||||||||||||  | |||||||||||||||||    
T  19312388 cagggccggccctaggcataggccgtgagtgcgacggcctagggtccatgccggtagggggccct 19312324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 5770790 - 5770861
Alignment:
Q  309 tttggtttttcttaataatgtgccaaaaaa-ttattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||   |||||| || |||||||||||    
T  5770790 tttggtttttcttaataatgtgccaaaaaatttattatcgaagaaattggcgatatttttatgggccctttg 5770861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 43179650 - 43179544
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtg-ccaaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||| ||||||||||||||||| |||||||   |||| ||| |||||| ||||||| | |||||||||||||| ||||||||  ||||||| |||| ||    
T  43179650 acaaagatttctatatacaccctgcctataatcttttttgttgttcttactaatgtgtcaaaaaaattattatccaataaattagtgatatttttttagg 43179551  T
Q  373 ccctttg 379  Q
    | |||||    
T  43179550 ctctttg 43179544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 48238114 - 48238180
Alignment:
Q  76 agcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  48238114 agcagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 48238180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 31072750 - 31072642
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatg-ttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    |||||| ||||||||||||| |||| ||||||   |||||||| ||||| ||||| ||| |||||| ||||||||||| |||||| ||||||| ||||||    
T  31072750 acaaaattttctatatacacactcc-tataaaaaattttggttgttcttgataatatgctcaaaaatttattatcgaagaaatttgtgatatttttttgg 31072652  T
Q  372 gccctttgct 381  Q
    || |||||||    
T  31072651 gcactttgct 31072642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 37549235 - 37549171
Alignment:
Q  77 gcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||| | |||||||  ||||||||||||||||||| | |||| |||||||||||    
T  37549235 gcagggccggccctaggcataggccaggggtgcgacggcctagggcccatgcccgtagggggccc 37549171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 48636360 - 48636424
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  48636360 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 48636424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 8389525 - 8389419
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||||    ||||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  8389525 acaaatatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 8389427  T
Q  372 gccctttg 379  Q
    ||||||||    
T  8389426 gccctttg 8389419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 31072988 - 31072925
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | | ||||||||||||||    
T  31072988 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatcccggtagggggccc 31072925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 8604818 - 8604737
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgcca-aaaaattattatcgaataaatt 355  Q
    ||||| |||||||| |||||| ||| ||||||   ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  8604818 acaaagatttctatgtacacc-tccttataaaaaatttggttgttcttaataatgtgccagaaaaattattatcgaagaaatt 8604737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 135357 - 135421
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | ||||| || | ||||||||||||||||| | |||| ||||||||||||    
T  135357 cagggccggccctaggcataggtcgggagtgcgacggcctagggcccatgcctgtagggggccct 135421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 4539743 - 4539850
Alignment:
Q  273 aacaaaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttg 370  Q
    |||| ||||||||||||||||||||| ||||||     |||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| |||||    
T  4539743 aacacaaatttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 4539841  T
Q  371 ggccctttg 379  Q
    |||||||||    
T  4539842 ggccctttg 4539850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 8069234 - 8069294
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||    
T  8069234 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtaggggg 8069294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 8389760 - 8389696
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||||||    
T  8389760 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggccc 8389696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 15680168 - 15680104
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||  ||||||||||||    
T  15680168 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgctcgtagggggccct 15680104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 18667012 - 18667076
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||  | ||||||||||||||||| ||||||||||||||||||    
T  18667012 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtagggggccc 18667076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 4539509 - 4539576
Alignment:
Q  75 gagcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||||| |  |||||||| | ||||||||||||||||| | |||||| |||||||||    
T  4539509 gagcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccgggagggggccc 4539576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 10016189 - 10016130
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    |||||||||||||| | ||||||||  |||||||||||||||||| | |||| |||||||    
T  10016189 cagggccggccctaggcataggccggaggtgcgacggcctagggcccatgcccgtagggg 10016130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 13753759 - 13753821
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggc 139  Q
    |||||||||||||| |  |||||||| | ||||||| ||||||||| ||||||||||||||||    
T  13753759 cagggccggccctagggcataggccgcgagtgcgacagcctagggcccttgccggtagggggc 13753821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 21863482 - 21863540
Alignment:
Q  280 atttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaa 338  Q
    ||||||||||||||| ||||||||||    | ||||||||||| |||||||||||||||    
T  21863482 atttctatatacaccttccctataaaaacatcggtttttcttattaatgtgccaaaaaa 21863540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 166 - 379
Target Start/End: Original strand, 40145236 - 40145450
Alignment:
Q  166 gtgtatagtaatgtttactgaaaggcccaaacatgttgaaaggctgtgctgaagtctgttaaag-ttatggcccttttgtctcaatttgttatatataca 264  Q
    ||||||||||| | ||||||||||||||||||||||||||||||  |||||||| |||||||   ||||||||||||||||| |||||  |||||||||     
T  40145236 gtgtatagtaaaggttactgaaaggcccaaacatgttgaaaggcaatgctgaagcctgttaatcattatggcccttttgtctaaatttactatatatacc 40145335  T
Q  265 cccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatat 363  Q
     ||||||| ||| | ||||||| ||||||||||||||||||| |||| |||||||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  40145336 tccttatatacagagatttctacatacaccctccctataaattttttagtttttcttaataatgtgcaaaaaaaactattatcgaataaatttgtgatat 40145435  T
Q  364 tattttgggccctttg 379  Q
    | ||||||||||||||    
T  40145436 t-ttttgggccctttg 40145450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 161 - 364
Target Start/End: Original strand, 1424457 - 1424667
Alignment:
Q  161 ggggtgtgtatagtaatgtttactgaaaggcccaaacat------gttgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgt 254  Q
    ||||||| |||||||| ||| ||| ||||||||||||||      | |||||||||| ||||||||||||| | | | | |||||| ||||||||||||     
T  1424457 ggggtgtatatagtaaagttcactaaaaggcccaaacattgacatgatgaaaggctgagctgaagtctgttgatgattttgcccttctgtctcaatttgc 1424556  T
Q  255 tatatatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgcc-aaaaaattattatcgaataaa 353  Q
    ||||||||| | | |||| ||||| |||||||||||||||||||| |||||    |||||||||||||| |||||||| |||||||||||||| || |||    
T  1424557 tatatataccctcgtatatacaaagatttctatatacaccctccccataaaaaaattggtttttcttaaaaatgtgccaaaaaaattattatcaaagaaa 1424656  T
Q  354 tttatgatatt 364  Q
    |||||||||||    
T  1424657 tttatgatatt 1424667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 361
Target Start/End: Complemental strand, 16877143 - 16877013
Alignment:
Q  231 tatggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtg 330  Q
    |||| |||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||||   ||| ||||||| ||||||||||    
T  16877143 tatgacccttttgtctcaatttgctatatatacccccttatatacaaatatttctatatacaccctccctataaa-aatttagtttttcctaataatgtg 16877045  T
Q  331 cc-aaaaaattattatcgaataaatttatgat 361  Q
    || |||||| ||||||||||||||||| ||||    
T  16877044 ccaaaaaaaatattatcgaataaatttgtgat 16877013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 197 - 364
Target Start/End: Complemental strand, 30191468 - 30191302
Alignment:
Q  197 catgttgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccct 296  Q
    |||| |||||||||| ||||||| |||||||   ||| ||||||||||||||||||  ||||||||| ||   ||| ||||| |||||||||||||||||    
T  30191468 catgatgaaaggctgagctgaagcctgttaa---tattgcccttttgtctcaattttctatatataccccgacatatacaaagatttctatatacaccct 30191372  T
Q  297 ccctataa-atgttttggtttttcttaataatgtgcca-aaaaattattatcgaataaatttatgatatt 364  Q
    ||||||||  | ||||||||||||||| |||||||||| |||  ||||||||||| |||||| |||||||    
T  30191371 ccctataattttttttggtttttcttactaatgtgccagaaactttattatcgaagaaatttgtgatatt 30191302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 1424344 - 1424408
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  1424344 cagggccggccctaggtataggccgggggtgcgacggcctagggcccatgccggtagggggccct 1424408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 10993298 - 10993216
Alignment:
Q  273 aacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaattattatcgaataaatt 355  Q
    |||| ||||||||||||||||||||||||||||    |||||||||||||||||||| | ||||| ||||||| |||||||||    
T  10993298 aacacaaatttctatatacaccctccctataaaaaaattggtttttcttaataatgtccaaaaaatttattatagaataaatt 10993216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 47184849 - 47184948
Alignment:
Q  280 atttctatatacaccctccctataaa-tgttttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggcccttt 378  Q
    ||||||| ||||||||| |||||||| |  ||||||| || |||||||||| ||||||||||||||||||| |||||  |||||||  ||||||||||||    
T  47184849 atttctacatacacccttcctataaaataatttggttgtttttaataatgtaccaaaaaattattatcgaagaaattggtgatatttatttgggcccttt 47184948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 374
Target Start/End: Original strand, 12892848 - 12893027
Alignment:
Q  196 acatgttgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgttatatatacacccttataa-acaaaaatttctatatacacc 294  Q
    ||||| |||| ||||| |||||| |||||||| ||| | ||||||||| | | ||||| |||| ||||  || ||||  ||||| ||||||||| |||||    
T  12892848 acatgatgaagggctgagctgaaatctgttaatgtttttgcccttttgacgctatttgctatacatacctccgtatagcacaaagatttctatacacacc 12892947  T
Q  295 ctccctataaatgttttggtttttcttaataatgtgccaaaa-aattattatcgaataaatttatgatattattttgggcc 374  Q
    |||||||||||     ||||| |||||||||||||||||||| | || ||||| |||||||| ||| |||| |||||||||    
T  12892948 ctccctataaaaaaaatggttgttcttaataatgtgccaaaacagttgttatcaaataaattaatggtatt-ttttgggcc 12893027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 19156971 - 19157077
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||||    ||||||| ||||| ||||| ||| |||||| ||||||||||| ||||| |||||||| ||||||    
T  19156971 acaaatatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattgatgatatttttttgg 19157069  T
Q  372 gccctttg 379  Q
    ||||||||    
T  19157070 gccctttg 19157077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 6025206 - 6025144
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||||||||||||||    
T  6025206 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 6025144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 9467919 - 9467854
Alignment:
Q  75 gagcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||| | |||| |||||||||||    
T  9467919 gagcagggccggccctaggcataggccg-gggtgcgacggcctagggcccatgcccgtagggggccc 9467854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 23045322 - 23045258
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  23045322 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 23045258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 31885395 - 31885331
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  31885395 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 31885331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 4127186 - 4127307
Alignment:
Q  249 atttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaatt-attatc 346  Q
    ||||| ||||||||| ||| ||||  ||||| ||||||| ||||||||| ||||||| | ||||  || |||||||||||||| ||||||||| ||||||    
T  4127186 atttgctatatatacccccatatagcacaaatatttctacatacacccttcctataatttttttt-ttcttcttaataatgtgtcaaaaaattgattatc 4127284  T
Q  347 gaataaatttatgatattatttt 369  Q
    ||| |||||  ||||||| ||||    
T  4127285 gaagaaattggtgatattttttt 4127307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 25071521 - 25071626
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||||||||||||||||||||||| ||||||     |||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  25071521 acaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 25071619  T
Q  372 gcccttt 378  Q
    |||||||    
T  25071620 gcccttt 25071626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 33443197 - 33443262
Alignment:
Q  76 agcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||||   |||||||| |||||||| |||||||||| | |||| |||||||||||    
T  33443197 agcagggccggccctagtcataggccgggggtgcgaaggcctagggcccatgcccgtagggggccc 33443262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 53077193 - 53077086
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    |||||| |||||||||||||||||| ||||||    ||||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  53077193 acaaaattttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatt-ttttgg 53077096  T
Q  372 gccctttgct 381  Q
    ||||||||||    
T  53077095 gccctttgct 53077086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 19156736 - 19156800
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||||||    
T  19156736 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggccc 19156800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 372
Target Start/End: Complemental strand, 44663574 - 44663451
Alignment:
Q  248 aatttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaa-ttattat 345  Q
    |||||||||||||||| | | ||||| ||||| ||||||||||| |||| |||||||  | ||||  || |||||||||||||| ||||||| |||||||    
T  44663574 aatttgttatatatactctcgtataacacaaagatttctatatataccc-ccctata--tttttttcttcttcttaataatgtgacaaaaaatttattat 44663478  T
Q  346 cgaataaatttatgatattattttggg 372  Q
     ||| ||||| | |||||| |||||||    
T  44663477 tgaagaaattgacgatatttttttggg 44663451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 52448021 - 52448127
Alignment:
Q  274 acaaaaatttctatatacaccctccctataa-atgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||||||||||||||||||||| |||||||  | |||||| | ||||||||||| |||   |||| ||||||||||| |||||  ||||||| | ||||    
T  52448021 acaaaaatttctatatacaccct-cctataattttttttggatgttcttaataatatgcttgaaaatttattatcgaagaaattagtgatattttattgg 52448119  T
Q  372 gccctttg 379  Q
    ||||||||    
T  52448120 gccctttg 52448127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 17147146 - 17147212
Alignment:
Q  287 tatacaccctccctataaatgttttggtttttcttaataatgtgcc-aaaaaattattatcgaataa 352  Q
    |||| ||||||||||||||    |||||||||| |||||||||||| |||||||||||||| |||||    
T  17147146 tatataccctccctataaaaaaattggtttttcctaataatgtgccaaaaaaattattatcaaataa 17147212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 30191632 - 30191571
Alignment:
Q  77 gcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    ||||||||||||||| | ||||| || || ||| |||||||||||| | |||||||||||||    
T  30191632 gcagggccggccctaggaataggtcggggatgcaacggcctagggcccatgccggtaggggg 30191571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 1420253 - 1420189
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||| | | ||||||||||||||||| | |||  ||||||||||||    
T  1420253 cagggccggccctaggcataggctgcgagtgcgacggcctagggcccatgctcgtagggggccct 1420189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 22917793 - 22917857
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||| ||||||||||||| | |||  ||||||||||||    
T  22917793 cagggccggccctaggcataggccgcgagtgtgacggcctagggcccatgctcgtagggggccct 22917857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 25071278 - 25071342
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| |  |||||||||||||||    
T  25071278 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccaagccggtagggggccc 25071342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 27941976 - 27941912
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  ||| |||| | ||||||||||||||||| | ||||||||||||||||    
T  27941976 cagggccggccctagggcataagccgcgagtgcgacggcctagggcccatgccggtagggggccc 27941912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 30376917 - 30376981
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||| ||||| | |||||||| | ||||||||||||||||| | |||  ||||||||||||    
T  30376917 cagggccgaccctaggcataggccgcgagtgcgacggcctagggcccatgctcgtagggggccct 30376981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 36640723 - 36640767
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggc 122  Q
    |||||||||||||| | |||||||| | |||||||||||||||||    
T  36640723 cagggccggccctaggcataggccgcgagtgcgacggcctagggc 36640767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 161 - 379
Target Start/End: Complemental strand, 6769699 - 6769480
Alignment:
Q  161 ggggtgtgtatagtaatgtttactgaaaggcccaaacatgttgaaaggctgtgctgaagtctgttaaagtt-atggcccttttgtctcaatttgttatat 259  Q
    ||||||||||||| ||   |||||||||||||||||||| |||||||| |||| |||||  |||||| ||| ||||||  |||||||||||||| |||||    
T  6769699 ggggtgtgtatagcaaatattactgaaaggcccaaacatattgaaaggttgtgttgaagcttgttaatgtttatggcctatttgtctcaatttgctatat 6769600  T
Q  260 atacacccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatg 359  Q
    |||| |  ||||| |||||  ||||| |||||||||||| ||||||| || |  ||||| |||||||||||||||||| ||||||| |||||||||| ||    
T  6769599 ataccctattatatacaaaggtttctttatacaccctccttataaattttgtattttttattaataatgtgccaaaaatttattattgaataaatttgtg 6769500  T
Q  360 atattattttgggccctttg 379  Q
    ||||| ||||||||||||||    
T  6769499 atatttttttgggccctttg 6769480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 379
Target Start/End: Complemental strand, 38916064 - 38915834
Alignment:
Q  160 gggggtgtgtatagtaatgtttactgaaaggcccaaacat------gttgaaaggctgtgctgaagtctgttaaag-ttatggcccttttgtctcaattt 252  Q
    |||||||| |||||||| ||| ||| ||||||||||||||      | ||||||||||  |||||| ||||| | | || |||||||| |||||||||||    
T  38916064 gggggtgtatatagtaaagttcactaaaaggcccaaacattgacatgatgaaaggctggactgaagcctgttgatgattttggcccttctgtctcaattt 38915965  T
Q  253 gttatatatacacccttataaacaaaaatttctatatacaccctccctat-aaatgttttggtttttcttaataatgtgccaaaaa----attattatcg 347  Q
    | ||| ||||| | | |||| ||||| |||||||||||||||||||| || |||    |||||||||||||||||||||| |||||    | |||||||     
T  38915964 gctatgtataccctcgtatatacaaagatttctatatacaccctccccataaaaaaaattggtttttcttaataatgtgcgaaaaaaattagtattatca 38915865  T
Q  348 aataaatttatgatattattttgggccctttg 379  Q
    || |||||||||||||| ||| ||||||||||    
T  38915864 aagaaatttatgatatt-tttggggccctttg 38915834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 9409778 - 9409673
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||| | |||| |||| ||||||||||| ||| |||||||| ||||||||| ||||| |||||||| ||||||    
T  9409778 acaaatatttctatatacaccctcc-tataattttttttggttgttcttaataatatgctaaaaaatttattatcgaagaaattaatgatatttttttgg 9409680  T
Q  372 gcccttt 378  Q
    | |||||    
T  9409679 gtccttt 9409673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 18888946 - 18889054
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||||||||||||||||||||||| ||||||     |||||| ||||| ||||| ||| |||||| ||||||||||| |||||| ||||||| ||||||    
T  18888946 acaaaaatttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaatttgtgatatttttttgg 18889044  T
Q  372 gccctttgct 381  Q
    ||||||||||    
T  18889045 gccctttgct 18889054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 43324167 - 43324104
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| | |||||||| ||||||||||||||||||| | |||| |||||||||||    
T  43324167 cagggccggccctaggcataggccgggggtgcgacggcctagggcccatgcccgtagggggccc 43324104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 42879473 - 42879578
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggttt-ttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||| | |||| | || ||||||||||| ||| |||||| ||||||||||| ||||| |||||||| ||||||    
T  42879473 acaaatatttctatatacaccctcc-tataactttttttgattgttcttaataatatgctcaaaaatttattatcgaagaaattaatgatatttttttgg 42879571  T
Q  372 gcccttt 378  Q
    | |||||    
T  42879572 gtccttt 42879578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 379
Target Start/End: Complemental strand, 16686970 - 16686802
Alignment:
Q  213 gctgaagtctgttaaagttat-ggcccttttgtctcaatttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgttt 310  Q
    ||||||||||||||||||| | ||||||||| ||   ||||| ||||||||   |||||||  ||||| |||||||| |||||||||||||||||         
T  16686970 gctgaagtctgttaaagtttttggcccttttatcaagatttgctatatataataccttatagcacaaagatttctatgtacaccctccctataaa-aaaa 16686872  T
Q  311 tggtttttcttaataatgtgcc-aaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    ||||| ||| | |||||||||| ||||||||||||||||| |||||  |||| || |||||||| |||||    
T  16686871 tggttgttcatgataatgtgccaaaaaaattattatcgaaaaaattggtgatgtttttttgggctctttg 16686802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 38490701 - 38490766
Alignment:
Q  77 gcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    ||||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  38490701 gcagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 38490766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 13490034 - 13490098
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| ||||||||||||||||||    
T  13490034 cagggccggccctaagccataggccgcgagtgcgacggcctagggcccttgccggtagggggccc 13490098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 13383062 - 13382999
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | ||||| ||||||||||    
T  13383062 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgccgttagggggccc 13382999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 13821057 - 13820995
Alignment:
Q  309 tttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||||| ||||||||||| || |||||||||||||||||| ||||| |||||||| |||||||    
T  13821057 tttggttgttcttaataat-tgtcaaaaaattattatcgaagaaattgatgatatttttttggg 13820995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 23962728 - 23962834
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||||    ||||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  23962728 acaaacatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 23962826  T
Q  372 gccctttg 379  Q
    ||||||||    
T  23962827 gccctttg 23962834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 29149296 - 29149355
Alignment:
Q  79 agggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    ||||||||||||| | |||||  | ||||||||||||||||||||| |||||||||||||    
T  29149296 agggccggccctaggcataggttgggggtgcgacggcctagggctcatgccggtaggggg 29149355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 40583528 - 40583606
Alignment:
Q  277 aaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaattattatcgaataaatt 355  Q
    ||||||||||| || ||||||||||||||   |||| |||||||| ||||||||  ||||| ||||||||||| |||||    
T  40583528 aaaatttctatttataccctccctataaaaaatttgatttttcttgataatgtggaaaaaatttattatcgaagaaatt 40583606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 20892490 - 20892394
Alignment:
Q  277 aaaatttctatatacaccctccctataaatgttttggttt-ttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttggg 372  Q
    |||||||||||||| ||||||| ||||||| |||| | || ||||||||||| ||| ||||||||||||||||||  ||||  ||||||| |||||||    
T  20892490 aaaatttctatatataccctcc-tataaatttttttgattgttcttaataatatgctcaaaaaattattatcgaagtaattggtgatatttttttggg 20892394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 2676608 - 2676672
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||||||    
T  2676608 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggccc 2676672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 2676843 - 2676949
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||||    ||||||| ||||| ||||| |||  ||||||| ||||||||| |||||  ||||||| ||||||    
T  2676843 acaaatatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgcttaaaaatttattatcgaagaaattggtgatatttttttgg 2676941  T
Q  372 gccctttg 379  Q
    ||||||||    
T  2676942 gccctttg 2676949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 7849977 - 7850036
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | ||||||||||||    
T  7849977 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggg 7850036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 16040376 - 16040306
Alignment:
Q  310 ttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||| ||||||||||||||| |||||| || |||| ||| |||||  ||||||| ||||||||||||||    
T  16040376 ttggttgttcttaataatgtgctcaaaaatttgttattgaagaaattagtgatatttttttgggccctttg 16040306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 29789248 - 29789294
Alignment:
Q  280 atttctatatacaccctccctataaatgttttggtttttcttaataa 326  Q
    |||||||||||||| | |||||||||| |||||||| ||||||||||    
T  29789248 atttctatatacacaccccctataaattttttggttgttcttaataa 29789294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 37134672 - 37134757
Alignment:
Q  280 atttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgccaaaaaa-ttattatcgaataaatttatgatatt 364  Q
    ||||||||||||||||||| ||||| | |||| || | ||||||| |||||||||||||| ||||||||||| |||||  |||||||    
T  37134672 atttctatatacaccctcc-tataattttttttggatgttcttaacaatgtgccaaaaaatttattatcgaaaaaattggtgatatt 37134757  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 39537846 - 39537781
Alignment:
Q  77 gcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||| |  ||||||||   |||||||||||||||||  |||||||||||||||||    
T  39537846 gcagggccggccctagggcataggccgcaagtgcgacggcctagggcctttgccggtagggggccc 39537781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 5579066 - 5579002
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||  | ||||||||| ||||||| ||||||||||||||||||    
T  5579066 cagggccggccctagggcataggccacgagtgcgacgggctagggcccttgccggtagggggccc 5579002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 18888729 - 18888773
Alignment:
Q  95 ataggccgtgggtgcgacggcctagggctcttgccggtagggggc 139  Q
    |||||||| | ||||||||||||||||| | ||||||||||||||    
T  18888729 ataggccgcgagtgcgacggcctagggcccatgccggtagggggc 18888773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 41869418 - 41869462
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggc 122  Q
    |||||||||||||| | |||||||| | |||||||||||||||||    
T  41869418 cagggccggccctaggcataggccgcgagtgcgacggcctagggc 41869462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 42879239 - 42879299
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||    
T  42879239 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 42879299  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 273 - 377
Target Start/End: Original strand, 48646030 - 48646136
Alignment:
Q  273 aacaaaaatttctatatacaccctccctataaatg--ttttggtttttcttaataatgtgccaaaa-aattattatcgaataaatttatgatattatttt 369  Q
    |||||| ||||||||||||||||| ||||||| |   |||||||||||| ||||||||| |||||| ||||||||||||| |||||| |||||||| |||    
T  48646030 aacaaatatttctatatacacccttcctataatttgtttttggtttttcctaataatgttccaaaaaaattattatcgaagaaatttgtgatatta-ttt 48646128  T
Q  370 gggccctt 377  Q
    ||||||||    
T  48646129 gggccctt 48646136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 12027664 - 12027771
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaa--ttattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||| ||||||||||     ||||| ||||||||||| ||||||||||  |||||||||||||||||  ||||||| |||| |    
T  12027664 acaaacatttctatatacaccgtccctataaaaaaaatggttgttcttaataatatgccaaaaaaatttattatcgaataaattggtgatatttttttag 12027763  T
Q  372 gccctttg 379  Q
    ||||||||    
T  12027764 gccctttg 12027771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 48999290 - 48999389
Alignment:
Q  281 tttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggccctttgc 380  Q
    |||||||||||||||||| ||||||   ||||||| ||||| ||||| ||| ||||| ||||||||||| |||||  ||||||| |||||||||||||||    
T  48999290 tttctatatacaccctcc-tataaaaaatttggttgttcttgataatatgctaaaaatttattatcgaagaaattggtgatatttttttgggccctttgc 48999388  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 24185887 - 24185806
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaaaattattatcgaataaatt 355  Q
    ||||| |||||||| |||| ||||| ||||||  | |||||| |||||||||||||||||||||| |||||| |||||||||    
T  24185887 acaaagatttctatttacatcctccttataaaaatcttggttattcttaataatgtgccaaaaaaatattattgaataaatt 24185806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 9023093 - 9023183
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatatt 364  Q
    ||||||||||| ||||||||||  ||||||| | |||| |||| ||||||||||||||| |||||| ||||||||||| ||||| ||||||||    
T  9023093 acaaaaatttcaatatacaccc--cctataattttttttggttgttcttaataatgtgcgcaaaaatttattatcgaagaaattgatgatatt 9023183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 22070145 - 22070209
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||||| ||||||||||||||||| | ||||||||||||||||    
T  22070145 cagggccggccctagggcataggccgtgagtgcgacggcctagggcccatgccggtagggggccc 22070209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 36296358 - 36296422
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  36296358 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 36296422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 42721895 - 42721959
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  42721895 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 42721959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 26221340 - 26221403
Alignment:
Q  77 gcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    ||||||||||||||| | |||||||| | ||||||||||||||||| | || ||||||||||||    
T  26221340 gcagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgtcggtagggggcc 26221403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 5049333 - 5049441
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    |||||| |||||||||||||||||| ||||||     |||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  5049333 acaaaattttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 5049431  T
Q  372 gccctttgct 381  Q
    ||||||||||    
T  5049432 gccctttgct 5049441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 12784149 - 12784092
Alignment:
Q  319 cttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggccct 376  Q
    |||||||||||| ||||||| ||||||| || ||||| |||||||| |||||||||||    
T  12784149 cttaataatgtgtcaaaaaaatattatcaaagaaattaatgatatttttttgggccct 12784092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 21906257 - 21906365
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    |||||| |||||||||||||||||  |||||| |  ||||||| ||||| ||||| ||| | |||| ||||||||||| |||||  ||||||| ||||||    
T  21906257 acaaaattttctatatacaccctca-tataaaagaatttggttgttcttgataatatgctccaaaatttattatcgaagaaattggtgatatttttttgg 21906355  T
Q  372 gccctttgct 381  Q
    ||||||||||    
T  21906356 gccctttgct 21906365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 1347167 - 1347103
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||  ||||||||||||    
T  1347167 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgctcgtagggggccct 1347103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 5049096 - 5049160
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||||||    
T  5049096 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggccc 5049160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 32179238 - 32179174
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    ||||||||||| || | |||||||| | ||||||||||||||||||| |||  ||||||||||||    
T  32179238 cagggccggccttaggcataggccgcgagtgcgacggcctagggctcatgctcgtagggggccct 32179174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 34307905 - 34307845
Alignment:
Q  81 ggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||| | |||||||| | ||||||||||||||||| | ||||| ||||||||||    
T  34307905 ggccggccctaggcataggccgcgagtgcgacggcctagggcccatgccgttagggggccc 34307845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 49229527 - 49229471
Alignment:
Q  308 ttttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatatt 364  Q
    |||||| | ||||||| |||||| |||||||||||||| ||| ||||||||||||||    
T  49229527 ttttggatgttcttaaaaatgtgtcaaaaaattattattgaagaaatttatgatatt 49229471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 21906018 - 21906085
Alignment:
Q  75 gagcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||||| |  |||||||| | ||||||||||||||||  | ||||||||||||||||    
T  21906018 gagcagggccggccctagggcataggccgcgagtgcgacggcctagggtccatgccggtagggggccc 21906085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 22070381 - 22070487
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||||||||||||||||| ||||| ||||||    ||||||| ||||| ||||| | | |||||| ||||||||||| |||||  ||||||| ||||||    
T  22070381 acaaaaatttctatatacatcctcc-tataaaaaaatttggttgttcttgataatatactcaaaaatttattatcgaagaaattggtgatatttttttgg 22070479  T
Q  372 gccctttg 379  Q
    ||||||||    
T  22070480 gccctttg 22070487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 48596519 - 48596472
Alignment:
Q  332 caaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||| ||||||||||| |||||| ||||||| ||||||||||||||    
T  48596519 caaaaatttattatcgaagaaatttgtgatatttttttgggccctttg 48596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 34307672 - 34307567
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    |||||| |||||||||||||||||| ||||||     |||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  34307672 acaaaattttctatatacaccctcc-tataaaaaaaattggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 34307574  T
Q  372 gcccttt 378  Q
    |||||||    
T  34307573 gcccttt 34307567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 28946260 - 28946200
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| | |||||||  | ||||||||||||| ||| | |||||||||||||    
T  28946260 cagggccggccctaggcataggccacgagtgcgacggcctaaggcccatgccggtaggggg 28946200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 19107821 - 19107880
Alignment:
Q  280 atttctatatacaccctccctataaatg-ttttggtttttcttaataatgtgccaaaaaa 338  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  19107821 atttctatatacaccctccctataaatgtttttggttattcttaataatgtgccaaaaaa 19107880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 1422833 - 1422939
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    |||||| |||||||||||||||||| ||||||| |||| |||| ||||||||||| ||| | |||| ||||||||||| |||||  ||||||| ||||||    
T  1422833 acaaaactttctatatacaccctcc-tataaatttttttggttgttcttaataatatgctcgaaaatttattatcgaagaaattggtgatatttttttgg 1422931  T
Q  372 gccctttg 379  Q
    ||||||||    
T  1422932 gccctttg 1422939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 34043422 - 34043528
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||||| |||| |||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  34043422 acaaatatttctatatacaccctcc-tataaatttttttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 34043520  T
Q  372 gccctttg 379  Q
    ||||||||    
T  34043521 gccctttg 34043528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 378
Target Start/End: Complemental strand, 11681143 - 11680978
Alignment:
Q  217 aagtctgttaaagttat-ggcccttttgtctcaatttgttatatatacacccttataa-acaaaaatttctatatacaccctccctata-aatgttttgg 313  Q
    ||||||||||| ||| | |||||||||| | ||||||| ||||| ||| | | ||||| ||||| |||||||||||||||||||||||| ||    ||||    
T  11681143 aagtctgttaatgtttttggcccttttggcgcaatttgctatatgtaccctcatataacacaaagatttctatatacaccctccctatataaaaaattgg 11681044  T
Q  314 tttttcttaataatgtg-ccaaaaaattattatcgaataaatttatgatattattttgggcccttt 378  Q
    || |||||||| ||||| | |||||||||||||| || |||||  | ||||| |||||||||||||    
T  11681043 ttgttcttaatgatgtgtcaaaaaaattattatccaagaaattagtaatatttttttgggcccttt 11680978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 30359546 - 30359642
Alignment:
Q  247 caatttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaa--tgttttggtttttcttaataatgtgccaaaaaatt 340  Q
    |||| |||||||||||| ||||| ||| ||||| ||||||||||||| |||||||||||   | |||| ||| ||||||||||||||||||||||||    
T  30359546 caatatgttatatatactcccttttaacacaaatatttctatatacatcctccctataatattttttttgttgttcttaataatgtgccaaaaaatt 30359642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 14677385 - 14677448
Alignment:
Q  77 gcagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    ||||||||||||||| | |||||||| | ||||||||||||||||| | |||||||||||||||    
T  14677385 gcagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 14677448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 379
Target Start/End: Original strand, 30358728 - 30358865
Alignment:
Q  247 caatttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataa---atgttttggtttttcttaataatgtgccaaaaaa-tta 341  Q
    |||| |||||||||||| || || ||| ||||| ||||||||||||| |||||||||||    | |||| ||| |||||||||||||||||||||| |||    
T  30358728 caatatgttatatatacccctttttaacacaaatatttctatatacatcctccctataatttttttttttgttgttcttaataatgtgccaaaaaattta 30358827  T
Q  342 ttatcgaataaatttatgatattattttgggccctttg 379  Q
    | | |||| |||||  ||||||| ||||||||| ||||    
T  30358828 tcaacgaagaaattcgtgatatttttttgggccttttg 30358865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 18674997 - 18675057
Alignment:
Q  79 agggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    ||||||||||||| |  |||||||| ||||||||||||||||||| |||||||||||||||    
T  18674997 agggccggccctaaggcataggccgcgggtgcgacggcctagggcccttgccggtaggggg 18675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 3229381 - 3229318
Alignment:
Q  310 ttggtttttcttaataatgtgccaaaaaa-ttattatcgaataaatttatgatattattttggg 372  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||   |||||| |||||||    
T  3229381 ttggtttttcttaataatgtgccaaaaaatttattatcgaagaaattagcgatatttttttggg 3229318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 20990099 - 20990160
Alignment:
Q  77 gcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    ||||||||||||||| |  |||||||| | ||||||||||||||||| ||||||||||||||    
T  20990099 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtagggg 20990160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 31475219 - 31475155
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | |||  ||||||||||||    
T  31475219 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgctcgtagggggccct 31475155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 33517040 - 33516976
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | |||| |||||||||||| | |||||||||||||||||    
T  33517040 cagggccggccctaggcataggccacgagtgcaacggcctagggcccatgccggtagggggccct 33516976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 1603248 - 1603354
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||||    ||||||| ||||| ||||| |||  ||||||| ||||||||| |||||  ||||||| ||||||    
T  1603248 acaaatatttctatatacaccctcc-tataaaaaaatttggttgttcttgataatatgcttaaaaatttattatcgaagaaattggtgatatttttttgg 1603346  T
Q  372 gccctttg 379  Q
    ||||||||    
T  1603347 gccctttg 1603354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 21442391 - 21442457
Alignment:
Q  76 agcagggccggccctat-gtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||||  | |||||||| | ||||||||||||||||  | ||||||||||||||||    
T  21442391 agcagggccggccctagagcataggccgcgagtgcgacggcctagggtccatgccggtagggggccc 21442457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 1131415 - 1131480
Alignment:
Q  77 gcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||| |  |||||||  | |||||||||||||| || ||||||||||||||||||    
T  1131415 gcagggccggccctagggcataggccaagagtgcgacggcctagagcccttgccggtagggggccc 1131480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 1603013 - 1603074
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | |||||||||||||    
T  1603013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 1603074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 13758966 - 13758897
Alignment:
Q  311 tggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    ||||| ||||||||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||| ||||||    
T  13758966 tggttgttcttaataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgggtcctttg 13758897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 15060050 - 15060102
Alignment:
Q  278 aaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgc 331  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||||||    
T  15060050 aaatttctatatacaccct-cctataaaaaatttggttgttcttaataatgtgc 15060102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 22012575 - 22012514
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | |||||||||||||    
T  22012575 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 22012514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 33516885 - 33516788
Alignment:
Q  202 tgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccc 299  Q
    ||||| |||| |||| |||||||||  ||| ||||| |||||   ||||||| ||||||||| || | | |||||||  |||||||||||||||||||    
T  33516885 tgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctatatacaccctccc 33516788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 9534376 - 9534313
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| | ||||||||||||| ||| | |||| ||||||||||||    
T  9534376 cagggccggccctaggcataggccgcgagtgcgacggcctaaggc-catgcccgtagggggccct 9534313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 12269066 - 12269118
Alignment:
Q  85 ggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggg 137  Q
    ||||||| | ||||||| || ||| ||||||||||||||| ||||||||||||    
T  12269066 ggccctaggcataggccatgagtgagacggcctagggctcatgccggtagggg 12269118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 34043181 - 34043245
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||| ||||||||||||| | ||||||||||||||||    
T  34043181 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggccc 34043245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 375
Target Start/End: Original strand, 35824029 - 35824156
Alignment:
Q  249 atttgttatatatacacccttataa-acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgccaaaa-aattattatc 346  Q
    ||||| ||||||||| ||||||||| ||| ||||||| ||||||||| |||||||| |   | ||||| |||||||||||||||||||| ||||||||||    
T  35824029 atttgctatatatac-cccttataacacacaaatttccatatacaccttccctatacaaaatgtggttgttcttaataatgtgccaaaagaattattatc 35824127  T
Q  347 gaataaatttatgatattattttgggccc 375  Q
     || |||||  ||||||| ||||||||||    
T  35824128 aaaaaaattggtgatatttttttgggccc 35824156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 45117344 - 45117450
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||||||||||||||||||||||| ||||||  | ||||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| ||||||    
T  45117344 acaaaaatttctatatacaccctcc-tataaaaatatttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttgg 45117442  T
Q  372 gccctttg 379  Q
    ||||||||    
T  45117443 gccctttg 45117450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 31597399 - 31597505
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaa--tgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttg 370  Q
    |||||| |||||||||||||||||| ||||||  | |||||||| ||||| ||||| ||| |||||| ||||||||||| |||||  ||||||| |||||    
T  31597399 acaaaagtttctatatacaccctcc-tataaaatttttttggttgttcttgataatatgctcaaaaatttattatcgaagaaattggtgatatttttttg 31597497  T
Q  371 ggcccttt 378  Q
    ||||||||    
T  31597498 ggcccttt 31597505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 7973207 - 7973109
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgtttt-ggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgg 371  Q
    ||||| ||||||||||||||||||| ||||| | |||| |||| ||||||||||| ||| |||||| ||||||||||| ||||| |||||||| ||||||    
T  7973207 acaaatatttctatatacaccctcc-tataattttttttggttgttcttaataatatgctcaaaaatttattatcgaagaaattaatgatatttttttgg 7973109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 378
Target Start/End: Original strand, 16729609 - 16729713
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttggg 372  Q
    ||||||||||||||||||||||| ||||||||    |||||| || |||||||| ||| | |||| ||||||||||| |||||  ||||||| |||||||    
T  16729609 acaaaaatttctatatacaccct-cctataaaaaaattggttgtttttaataatatgctcgaaaatttattatcgaagaaattggtgatatttttttggg 16729707  T
Q  373 cccttt 378  Q
    ||||||    
T  16729708 cccttt 16729713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 6927983 - 6927919
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | ||||||||||||||||| | |||||||||||||||||    
T  6927983 cagggccggccctaggcataggccacgagtgcgacggcctagggcccatgccggtagggggccct 6927919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 370
Target Start/End: Complemental strand, 9382453 - 9382354
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgttttggttttt---cttaataatgtgccaaaaaattattatcgaataaatttatgatattattttg 370  Q
    ||||| ||||||||| ||||||||||||||||    |||||| ||   ||||||||||||| |||||||||||||| || |||||  ||||||| |||||    
T  9382453 acaaagatttctatacacaccctccctataaaaaaattggttgttgttcttaataatgtgctaaaaaattattatccaagaaattggtgatatttttttg 9382354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 31597165 - 31597226
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggc 139  Q
    |||||||||||||| | |||||||| | ||||||||||||||||| | ||||| ||||||||    
T  31597165 cagggccggccctaggcataggccgcgagtgcgacggcctagggcccatgccgttagggggc 31597226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 32073182 - 32073242
Alignment:
Q  317 ttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggcccttt 378  Q
    |||||||||| ||||||||||||||||||| || |||||| ||||||| ||||| |||||||    
T  32073182 ttcttaataacgtgccaaaaaattattatccaagaaatttgtgatatt-ttttgagcccttt 32073242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 3762339 - 3762403
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||||||    
T  3762339 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggccc 3762403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 11995159 - 11995095
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||  | |||||| |||||||||| | |||||||||||||||||    
T  11995159 cagggccggccctaggcataggccacgagtgcgatggcctagggcccatgccggtagggggccct 11995095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 379
Target Start/End: Original strand, 9137447 - 9137518
Alignment:
Q  308 ttttggtttttcttaataatgtgccaaaaaattattatcgaataaatttatgatattattttgggccctttg 379  Q
    ||||| ||||||||||||||| |||||||| ||||||| ||| ||||| | |||||| ||  ||||||||||    
T  9137447 ttttgatttttcttaataatgagccaaaaatttattattgaagaaattgacgatatttttacgggccctttg 9137518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 1981234 - 1981296
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggc 139  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | ||||||||||||||    
T  1981234 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggc 1981296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 7973443 - 7973378
Alignment:
Q  77 gcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||| |  |||||||  | ||||||||||||||||| | ||||||||||||||||    
T  7973443 gcagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggccc 7973378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 28509072 - 28509169
Alignment:
Q  202 tgaaaggctgtgctgaagtctgttaaagttatggcccttttgtctcaatttgttatatatacacccttataaacaaaaatttctatatacaccctccc 299  Q
    ||||| |||| |||| |||||||||  ||| ||||| |||||   ||||||| ||||||||| || | | |||||||  |||||||||||||||||||    
T  28509072 tgaaaagctgggctgcagtctgttattgttttggcctttttgatgcaatttgctatatataccccataagaaacaaagctttctatatacaccctccc 28509169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 45117137 - 45117198
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtaggggg 138  Q
    |||||||||||||| |  |||||||| | ||||||||||||||||| | |||||||||||||    
T  45117137 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 45117198  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 28508944 - 28508980
Alignment:
Q  106 gtgcgacggcctagggctcttgccggtagggggccct 142  Q
    ||||||||||||||||| | |||||||||||||||||    
T  28508944 gtgcgacggcctagggcccatgccggtagggggccct 28508980  T

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Target: scaffold0601 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 6427 - 6492
Alignment:
Q  77 gcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    ||||||||||||||| |  |||||||| | ||||||||||||||||| ||||||||||||||||||    
T  6427 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtagggggccc 6492  T

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Target: scaffold0116 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 40460 - 40524
Alignment:
Q  78 cagggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggccct 142  Q
    |||||||||||||| | |||||||| ||||||||||||||||||| | ||||  |||||||||||    
T  40460 cagggccggccctaggcataggccgggggtgcgacggcctagggcccatgccattagggggccct 40524  T

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Target: scaffold0116; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 40694 - 40768
Alignment:
Q  274 acaaaaatttctatatacaccctccctataaatgt-tttggtttttcttaataatgtgcc-aaaaaattattatc 346  Q
    |||||||||| ||||| |||||||||| ||||    |||||||||||||||||||||||| ||||||||||||||    
T  40694 acaaaaatttatatatgcaccctccctttaaaaaaatttggtttttcttaataatgtgccaaaaaaattattatc 40768  T

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Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 65985 - 66044
Alignment:
Q  81 ggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtagggggcc 140  Q
    ||||||||||| | |||||||| ||||||||||||||||||| | |||| ||||||||||    
T  65985 ggccggccctaggcataggccgggggtgcgacggcctagggcgcatgcccgtagggggcc 66044  T

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Target: scaffold1266 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 1225 - 1297
Alignment:
Q  310 ttggtttttcttaataatgtgccaaaaa---attattatcgaataaatttatgatattattttgggccctttg 379  Q
    |||||| |||||||||||||||||||||   |||||||||||| |||||| | ||||| |||| |||||||||    
T  1225 ttggttgttcttaataatgtgccaaaaaaatattattatcgaagaaatttgtaatatttttttaggccctttg 1297  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 119572 - 119468
Alignment:
Q  275 caaaaatttctatatacaccctccctataa--atgttttggtttttcttaataatgtgccaaaaa-attattatcgaataaatttatgatattattttgg 371  Q
    |||| ||||||||||||| |||||||||||  |  | |||||| ||||||||||||| ||||||| |||||||||||  |||||| | ||||| ||||||    
T  119572 caaagatttctatatacatcctccctataacaaaatattggttgttcttaataatgttccaaaaatattattatcgacgaaatttgtaatatt-ttttgg 119474  T
Q  372 gccctt 377  Q
    ||||||    
T  119473 gccctt 119468  T

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Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 381
Target Start/End: Original strand, 50781 - 50914
Alignment:
Q  249 atttgttatatatacacccttataaacaaaaatttctatatacaccctccctataaatgttttggtttttcttaataatgtgc-caaaaaattattatcg 347  Q
    ||||||||||||||  ||||   | |||||| |||||||||||||||||| |  |||   ||||| ||||||| ||||| ||| |||||| ||||||| |    
T  50781 atttgttatatatatcccctgtaacacaaaattttctatatacaccctcctttaaaaaaatttggcttttcttgataatatgctcaaaaatttattattg 50880  T
Q  348 aataaatttatgatattattttgggccctttgct 381  Q
    || |||||  ||||||| ||||||| ||||||||    
T  50881 aagaaattggtgatatttttttgggtcctttgct 50914  T

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Target: scaffold0093; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 50561 - 50629
Alignment:
Q  74 agagcagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||||||| |  ||||||||   ||||||||||||||||| | ||||||||||||||||    
T  50561 agagcagggccggccctagggcataggccgcaagtgcgacggcctagggcacatgccggtagggggccc 50629  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 87855 - 87753
Alignment:
Q  277 aaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgccaaaaaatt-attatcgaataaatttatgatattattttgggcc 374  Q
    |||||||||||||||||||||| ||||||     |||||| ||||||||||| ||||  |||||| ||||||||| |||||| ||||||| |||||||||    
T  87855 aaaatttctatatacaccctcc-tataaaaaaaattggttgttcttaataatatgcccgaaaatttattatcgaagaaatttgtgatatt-ttttgggcc 87758  T
Q  375 ctttg 379  Q
    |||||    
T  87757 ctttg 87753  T

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Target: scaffold0016; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 88331 - 88227
Alignment:
Q  277 aaaatttctatatacaccctccc-tataaatgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgggcc 374  Q
    ||||||||||||||||||||||  || |||    ||| || ||||||||||| ||| | |||| ||||||||||| |||||| ||||||| |||||||||    
T  88331 aaaatttctatatacaccctcctataaaaaaaaattgattgttcttaataatatgctcgaaaatttattatcgaagaaatttgtgatatttttttgggcc 88232  T
Q  375 ctttg 379  Q
    |||||    
T  88231 ctttg 88227  T

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Target: scaffold0016; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 88551 - 88503
Alignment:
Q  93 gtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||| | ||||||||||||||||| ||| ||||||||||||||    
T  88551 gtataggccgcgagtgcgacggcctagggccctttccggtagggggccc 88503  T

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Target: scaffold0016; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 88807 - 88703
Alignment:
Q  277 aaaatttctatatacaccctccc-tataaatgttttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgggcc 374  Q
    ||||||||||||||||||||||  || |||    ||| || ||||||||||| ||| | |||| ||||||||||| |||||| ||||||| |||||||||    
T  88807 aaaatttctatatacaccctcctataaaaaaaaattgattgttcttaataatatgctcgaaaatttattatcgaagaaatttgtgatatttttttgggcc 88708  T
Q  375 ctttg 379  Q
    |||||    
T  88707 ctttg 88703  T

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Target: scaffold0016; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 89027 - 88979
Alignment:
Q  93 gtataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||| | ||||||||||||||||| ||| ||||||||||||||    
T  89027 gtataggccgcgagtgcgacggcctagggccctttccggtagggggccc 88979  T

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Target: scaffold0016; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 89282 - 89179
Alignment:
Q  277 aaaatttctatatacaccctccctataaatgtt-ttggtttttcttaataatgtgc-caaaaaattattatcgaataaatttatgatattattttgggcc 374  Q
    |||||||||||||||||||||| ||||||     ||| || ||||||||||| ||| | |||| ||||||||||| |||||| ||||||| |||||||||    
T  89282 aaaatttctatatacaccctcc-tataaaaaaaattgattgttcttaataatatgctcgaaaatttattatcgaagaaatttgtgatatttttttgggcc 89184  T
Q  375 ctttg 379  Q
    |||||    
T  89183 ctttg 89179  T

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Target: scaffold0016; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 88073 - 88027
Alignment:
Q  95 ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||||||    
T  88073 ataggccgcgagtgcgacggcctagggccctttccggtagggggccc 88027  T

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Target: scaffold0016; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 89517 - 89453
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||  | ||||||||||||||||| |||| |||||||||||||    
T  89517 cagggccggccctaaggcataggccccgagtgcgacggcctagggcccttgtcggtagggggccc 89453  T

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Target: scaffold0743 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 3741 - 3684
Alignment:
Q  79 agggccggccctatgtataggccgtgggtgcgacggcctagggctcttgccggtaggg 136  Q
    ||||||||||||| | ||||||| || ||||||||||||||||| | |||| ||||||    
T  3741 agggccggccctaggcataggccatgagtgcgacggcctagggcccatgccagtaggg 3684  T

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Target: scaffold0308 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 12550 - 12486
Alignment:
Q  78 cagggccggccctatgt-ataggccgtgggtgcgacggcctagggctcttgccggtagggggccc 141  Q
    |||||||||||||| |  |||||||| | |||||||| |||||||| | ||||||||||||||||    
T  12550 cagggccggccctagggcataggccgcgagtgcgacgtcctagggcccatgccggtagggggccc 12486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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