View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_13 (Length: 386)
Name: NF2930_low_13
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 1895556 - 1895913
Alignment:
| Q |
18 |
attttagtgatcacaggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgctt |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1895556 |
attttagtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgctt |
1895655 |
T |
|
| Q |
118 |
attcttatgctgttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1895656 |
attcttatgctgttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaac |
1895755 |
T |
|
| Q |
218 |
atatttatataacttagtaaatgtttgaattgacggtgagtttaacagaatcacgctacaagaattttggcaacaaggtgctaccaagattttgtcaaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
1895756 |
atatttatataacttagtaaatgtttgaattgacggtgagtttgacagaatcacgctataagaattttggcaacaaggtgctaccaagattttctcaaat |
1895855 |
T |
|
| Q |
318 |
tcaccgtgattttaacaaaagccacccttgattaatttctttatgttttgcatttcat |
375 |
Q |
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| T |
1895856 |
tcaccgtgattttaacaaaatccacccttgattaatttctttatgttttgcatttcat |
1895913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 129 - 325
Target Start/End: Original strand, 1905506 - 1905706
Alignment:
| Q |
129 |
gttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatctattgcaattttcattaacattcaacatatttatata |
228 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||| |||||| |
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| T |
1905506 |
gttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtatata |
1905605 |
T |
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| Q |
229 |
acttagtaaatgtttgaattgacggtgagtttaacagaatcacgc----tacaagaattttggcaacaaggtgctaccaagattttgtcaaattcaccgt |
324 |
Q |
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|||| || |||||| ||||||||||||||| ||| |||||||| | | | |||||||||||| |||||| ||| |||||||||||||||||||| |
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| T |
1905606 |
acttggtgtctgtttggattgacggtgagtttgacaaaatcacgcatgttgcgaagattttggcaacacggtgcttccacgattttgtcaaattcaccgt |
1905705 |
T |
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| Q |
325 |
g |
325 |
Q |
| |
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| |
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| T |
1905706 |
g |
1905706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 1911038 - 1911166
Alignment:
| Q |
44 |
tattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgtt |
143 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
1911038 |
tattgacatggctttactcactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgtt |
1911137 |
T |
|
| Q |
144 |
cttcttcctgtcacacttttcactagaag |
172 |
Q |
| |
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||||| |||||||| |||||||||||||| |
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| T |
1911138 |
cttctccctgtcactcttttcactagaag |
1911166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 1890712 - 1890845
Alignment:
| Q |
24 |
gtgatcacaggacaggaaactattgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattctt |
123 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||| |
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| T |
1890712 |
gtgatcataggacaggaaactattgaaatggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgctt |
1890811 |
T |
|
| Q |
124 |
atgctgttggtacttctgttcttcttcctgtcac |
157 |
Q |
| |
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||||| |||||||| || |||| |||||| |||| |
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| T |
1890812 |
atgctattggtactgctattctccttcctatcac |
1890845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 1884090 - 1884201
Alignment:
| Q |
46 |
ttgaaatggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttct |
145 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||| |||||||||||| |||||| |||| |
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| T |
1884090 |
ttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttct |
1884189 |
T |
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| Q |
146 |
tcttcctgtcac |
157 |
Q |
| |
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|||||| |||| |
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|
| T |
1884190 |
ccttcctatcac |
1884201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 1878084 - 1878189
Alignment:
| Q |
52 |
tggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcc |
151 |
Q |
| |
|
|||||||| ||| ||| | ||||||||||||| |||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||| ||||| |
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| T |
1878084 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcc |
1878183 |
T |
|
| Q |
152 |
tgtcac |
157 |
Q |
| |
|
| |||| |
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| T |
1878184 |
tatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 1902000 - 1902083
Alignment:
| Q |
51 |
atggctttactcactttgttcaaagcagccacaaatcaagggatgaacaaccatgtctttgttgcttattcttatgctgttggt |
134 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
1902000 |
atggctttactcactttgttcaaagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 17240698 - 17240731
Alignment:
| Q |
238 |
atgtttgaattgacggtgagtttaacagaatcac |
271 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
17240698 |
atgtttgaattgacggtgagtttgacagaatcac |
17240731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 7873192 - 7873144
Alignment:
| Q |
224 |
atataacttagtaaatgtttgaattgacggtgagtttaacagaatcacg |
272 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| ||||||| |
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| T |
7873192 |
atataacttagtacatgtttggattgacggtgagtttaacataatcacg |
7873144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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