View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_14 (Length: 385)
Name: NF2930_low_14
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 81 - 369
Target Start/End: Complemental strand, 43073347 - 43073058
Alignment:
| Q |
81 |
atagcattttaagatttccaagtaagaaggcatgaaagctgaattttataggagagaagacatagtggtgcacaatgaatgaattaccattcaatcatct |
180 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43073347 |
atagcattttaagatttccaagtaagaaggcatgaaagctgaattttataggagagaagacatagtggtgcacaatgaatgaattaccattcaatcatct |
43073248 |
T |
|
| Q |
181 |
tcaaatgcaatagaagtagacgtagttgaacaactagggccctcttctgattgacaaatgtctatagaggatatnnnnnnnnt-attatgctcaagtata |
279 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
43073247 |
tcaaatgcaatagaagtagacgtagttgaacaactagggccctcttctgattgacaaatgtctatagaggatataaaaaaaatcattatgctcaagtata |
43073148 |
T |
|
| Q |
280 |
ataagtaataataaaaataattcatgtatcaacttgttctatcataccttgctcaagcaattcaagattctcaaaatcttcggttgtaat |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43073147 |
ataagtaataataaaaataattcatgtatcaacttgttctatcataccttgctcaagcaattcaagattctcaaaatcttcggttgtaat |
43073058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 81 - 369
Target Start/End: Original strand, 30990298 - 30990587
Alignment:
| Q |
81 |
atagcattttaagatttccaagtaagaaggcatgaaagctgaattttataggagagaagacatagtggtgcacaatgaatgaattaccattcaatcatct |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30990298 |
atagcattttaagatttccaagtaagaaggcatgaaagctgaattttataggagagaagacatagtggtgcacaatgaatgaattaccattcaatcatct |
30990397 |
T |
|
| Q |
181 |
tcaaatgcaatagaagtagacgtagttgaacaactagggccctcttctgattgacaaatgtctatagaggatatnnnnnnnnt-attatgctcaagtata |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
30990398 |
tcaaatgcaatagaagtagacgtagttgaacaactagggccctcttctgattgacaaatgtctatagaggatataaaaaaaatcattatgctcaagtata |
30990497 |
T |
|
| Q |
280 |
ataagtaataataaaaataattcatgtatcaacttgttctatcataccttgctcaagcaattcaagattctcaaaatcttcggttgtaat |
369 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30990498 |
ataagtaataataaaaataattcatgtgtcaacttgttctatcataccttgctcaagcaattcaagattctcaaaatcttcggttgtaat |
30990587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 162 - 360
Target Start/End: Complemental strand, 33134883 - 33134684
Alignment:
| Q |
162 |
aattaccattcaatcatcttcaaatgcaatagaagtagacgtagttgaacaactagggccctcttctgattgacaaatgtctatagaggatatnnnnnnn |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | | ||||| |
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| T |
33134883 |
aattaccattcaatcatcttcaaatgcaatagaagtagacgaagttgaacaactagggccctcttccgattgacaaatgtctacaaaagatataaaaaat |
33134784 |
T |
|
| Q |
262 |
nt-attatgctcaagtataataagtaataataaaaataattcatgtatcaacttgttctatcataccttgctcaagcaattcaagattctcaaaatcttc |
360 |
Q |
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| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33134783 |
ttcattatgctcaagtaaagtaagtaataataaaaataattcatgtataaacttgttctatcataccttgctcaagcaactcaagattctcaaaatcttc |
33134684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 33133334 - 33133246
Alignment:
| Q |
281 |
taagtaataataaaaataattcatgtatcaacttgttctatcataccttgctcaagcaattcaagattctcaaaatcttcggttgtaat |
369 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33133334 |
taagtaataataaaaataatttatgtatcaacttgttctatcataccttgctcaagcaactcaagattctcaaaatcttcagttgtaat |
33133246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 162 - 369
Target Start/End: Original strand, 4457267 - 4457474
Alignment:
| Q |
162 |
aattaccattcaatcatcttcaaatgcaatagaagtagacgtagttgaacaactagggccctcttctgattgacaaatgtctatagaggatatnnnnnnn |
261 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| | | |||| |
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|
| T |
4457267 |
aattaccattcaatcatcttcaagtgcaatagaagtagacgaagttgaacaactacggccctcttccgattgacaaatgtctacaaaagatagaaaaaaa |
4457366 |
T |
|
| Q |
262 |
ntattatgctcaagtataataagtaataataaaaataattcatgtatcaacttgttctatcataccttgctcaagcaattcaagattctcaaaatcttcg |
361 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
4457367 |
tcattatgctcaagtatagtaagaaatagtaaaaataattcatgtatcaacttgttctatcataccttgctcaagcaactcaagattttcaaaatcttca |
4457466 |
T |
|
| Q |
362 |
gttgtaat |
369 |
Q |
| |
|
|||||||| |
|
|
| T |
4457467 |
gttgtaat |
4457474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 44429830 - 44429949
Alignment:
| Q |
41 |
agaactacataaacaagttagtggatagaaggaaggacatatagcattttaagatttccaagtaagaaggcatgaaagctgaattttataggagagaaga |
140 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44429830 |
agaactacataaacaagttagtggatagaaggaaggacagatagcattttaagatttccaagtaagaaggcatgaaagctgaattttataggagagcaga |
44429929 |
T |
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| Q |
141 |
catagtggtgcacaatgaat |
160 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
44429930 |
catagtggtgcacaatgaat |
44429949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 7874212 - 7874269
Alignment:
| Q |
162 |
aattaccattcaatcatcttcaaatgcaatagaagtagacgtagttgaacaactaggg |
219 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |
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| T |
7874212 |
aattaccattcaatcatcttcgaatgcaatagaagtagacgatgttgaacaattaggg |
7874269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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