View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_16 (Length: 368)
Name: NF2930_low_16
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 5845056 - 5845416
Alignment:
| Q |
8 |
gacatcatcacataactaaaagcctcaggcgaacgttcaattcctcggcgagtcataagccgaagaatccgccttgctccttgacacaacctggtcttgc |
107 |
Q |
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| T |
5845056 |
gacaccatcacataactaaaagcctcaggcgaacgttcaattcctcggcgagtcataagccgaagaatccgccttgctccttgacacaacctggtcttgc |
5845155 |
T |
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| Q |
108 |
taagtatatccaacatcgtatagtacacaatagcatcatgcctataccgccattgcctatcagcccagtnnnnnnnntccaaagcaatcctttcatcatc |
207 |
Q |
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| T |
5845156 |
taagtatatccaacatcgtatagtacacaatagcatcatgcctataccgccattgcctatcagcccagtaaaaaaaatccaaagcaatcctttcatcatc |
5845255 |
T |
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| Q |
208 |
ctgagaccgcaaaacagcacaaacaagtcgaggattaagactccttaataaatgcctcaaattttcttcaaatttaggattccaatttgacctaagtgaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5845256 |
ctgagaccgcaaaacagcacaaacaagtcgaggattaagactccttaataaatgcctcaaattttcttcaaatttaggattccaatttgacctaagtgaa |
5845355 |
T |
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| Q |
308 |
atcaacctacaaacctccctaacaattgggtgtctaaattcactctcatcaatctcaaatc |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5845356 |
atcaacctacaaacctccctaacaattgggtgtctaaattcactctcatcaatctcaaatc |
5845416 |
T |
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