View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2930_low_19 (Length: 336)
Name: NF2930_low_19
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_19 |
 | |
|
| [»] scaffold1037 (2 HSPs) |
| | |
|
| [»] scaffold1031 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold1037 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: scaffold1037
Description:
Target: scaffold1037; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 1605 - 1912
Alignment:
| Q |
17 |
acaagtaacataagtaaaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttaca |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1605 |
acaagtaacataagtaaaataacagtaagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttaca |
1704 |
T |
|
| Q |
117 |
aaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacaactaccacatacaagaaagacaaattttgta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1705 |
aaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacacctaccacatacaagaaagacaaattttgta |
1804 |
T |
|
| Q |
217 |
aaaaatataaataaatttgacaagtatattatattcaatttgtttattagttttatattnnnnnnnncaagtattttcttctcgaaaaattgtggaaact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
1805 |
aaaaatataaataaatttgacaagtatattatattcaatttgtttattagttttatttt--aaaaaacaagtattttcttctcgaaaaattgcggaaact |
1902 |
T |
|
| Q |
317 |
aatcattcat |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
1903 |
aatcattcat |
1912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 3084 - 3227
Alignment:
| Q |
33 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtg |
132 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3084 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtg |
3183 |
T |
|
| Q |
133 |
tttgtcccttacaataaactacaaacaacataacaaaattcact |
176 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
3184 |
tctgtcccttacaagaaactacaaacaaaataacaaaattcact |
3227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: scaffold1031
Description:
Target: scaffold1031; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 1723 - 2030
Alignment:
| Q |
17 |
acaagtaacataagtaaaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttaca |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1723 |
acaagtaacataagtaaaataacagtaagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttaca |
1822 |
T |
|
| Q |
117 |
aaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacaactaccacatacaagaaagacaaattttgta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1823 |
aaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacacctaccacatacaagaaagacaaattttgta |
1922 |
T |
|
| Q |
217 |
aaaaatataaataaatttgacaagtatattatattcaatttgtttattagttttatattnnnnnnnncaagtattttcttctcgaaaaattgtggaaact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
1923 |
aaaaatataaataaatttgacaagtatattatattcaatttgtttattagttttatttt--aaaaaacaagtattttcttctcgaaaaattgcggaaact |
2020 |
T |
|
| Q |
317 |
aatcattcat |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
2021 |
aatcattcat |
2030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 9 - 152
Alignment:
| Q |
33 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtg |
132 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtg |
108 |
T |
|
| Q |
133 |
tttgtcccttacaataaactacaaacaacataacaaaattcact |
176 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
109 |
tctgtcccttacaagaaactacaaacaaaataacaaaattcact |
152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 3203 - 3289
Alignment:
| Q |
33 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaa |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3203 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaa |
3289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 15170654 - 15170797
Alignment:
| Q |
33 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtg |
132 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15170654 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtg |
15170753 |
T |
|
| Q |
133 |
tttgtcccttacaataaactacaaacaacataacaaaattcact |
176 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
15170754 |
tctgtcccttacaagaaactacaaacaaaataacaaaattcact |
15170797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 15169930 - 15170061
Alignment:
| Q |
103 |
tctttccatttacaaaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacaactaccacatacaagaa |
202 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
15169930 |
tctttccatttacaaaagtgaacacctgtgtttgtcccttacaataaac-------aacataacaaaattcactcattaaacacctaccacatacaagaa |
15170022 |
T |
|
| Q |
203 |
agacaaattttgtaaaaaatataaataaatttgacaagta |
242 |
Q |
| |
|
||||||||||| |||| || |||||||||||||| ||||| |
|
|
| T |
15170023 |
agacaaattttataaataa-ataaataaatttgagaagta |
15170061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University