View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_21 (Length: 321)
Name: NF2930_low_21
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 38605863 - 38606111
Alignment:
| Q |
1 |
acaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605863 |
acaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaa |
38605962 |
T |
|
| Q |
101 |
gatcctcttttctaaactcaactctcttctccctagctataatccaaaggtgannnnnnnnnnnnnnnnnnnnnctataaaccaaagggtatctgtttaa |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |
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| T |
38605963 |
gatcctcttttctaacctcaactctcttctccctagctataatccaaaggtgattttttgattttttt-------tataagccaaaggtgatctgtttaa |
38606055 |
T |
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| Q |
201 |
tttccatcacattcatattcatatatgtatattcatgtgaggaataaatcggcatt |
256 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
38606056 |
tttccatcacattcatatacatatatgtattttcatgtgaggaataaatcgacatt |
38606111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 38561442 - 38561594
Alignment:
| Q |
1 |
acaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38561442 |
acaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaa |
38561541 |
T |
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| Q |
101 |
gatcctcttttctaaactcaactctcttctccctagctataatccaaaggtga |
153 |
Q |
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| T |
38561542 |
gatcctcttttctaaactcaactctcttctccctagctataatcaaaaggtga |
38561594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 38580658 - 38580808
Alignment:
| Q |
1 |
acaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38580658 |
acaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaa |
38580757 |
T |
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| Q |
101 |
gatcctcttttctaaactcaactctcttctccctagctataatccaaaggt |
151 |
Q |
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| T |
38580758 |
gatcctcttttctaacctcaactctattctccctagctataatccaaaggt |
38580808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 38561618 - 38561751
Alignment:
| Q |
175 |
ctataaaccaaagggtatctgtttaatttccatcacattcatattcatatatgtatattcatgtgaggaataaatcggcattcattgcttgaacnnnnnn |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38561618 |
ctataaaccaaagggtatctgtttaatttccatcacattcatattcatatatgtatattcatgtgaggaataaatcggcattcattgcttgaacaaaaaa |
38561717 |
T |
|
| Q |
275 |
ntaaaatcggcattcgttgcataactctttgttg |
308 |
Q |
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||||||||||||| |||||||||||||||||| |
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| T |
38561718 |
aaaaaatcggcattcattgcataactctttgttg |
38561751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 38622428 - 38622318
Alignment:
| Q |
43 |
cttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaagatcctcttttctaaactcaactctcttctccctagctataa |
142 |
Q |
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|||||||||||||||| ||||||||| | |||||||||||||||||||| || ||||||||||||| ||| ||||| ||||||||||| ||||||||||| |
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| T |
38622428 |
cttcttcaaccaaagtcgaaagaaaggtcgttgagaaaaataggagaaatcagatgaagatcctctattccaaacttaactctcttcttcctagctataa |
38622329 |
T |
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| Q |
143 |
tccaaaggtga |
153 |
Q |
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| | ||||||| |
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| T |
38622328 |
ttccaaggtga |
38622318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 30195177 - 30195279
Alignment:
| Q |
49 |
caaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaagatcctcttttctaaactcaactctcttctccctagctataatccaaa |
148 |
Q |
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|||||||||| ||||||| | | ||||| ||||| || ||||| || ||||||||||||| || |||||||||||||||||||||| ||||||||| || |
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| T |
30195177 |
caaccaaagttgaaagaaggctcgttgaaaaaaacagaagaaatcagatgaagatcctctactccaaactcaactctcttctccctaactataatcccaa |
30195276 |
T |
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| Q |
149 |
ggt |
151 |
Q |
| |
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||| |
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| T |
30195277 |
ggt |
30195279 |
T |
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