View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2930_low_22 (Length: 300)
Name: NF2930_low_22
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 31212810 - 31213077
Alignment:
| Q |
16 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31212810 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
31212909 |
T |
|
| Q |
116 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31212910 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
31213009 |
T |
|
| Q |
216 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaatgtcct |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213010 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctgaatgtcct |
31213077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 31218565 - 31218832
Alignment:
| Q |
16 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31218565 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
31218664 |
T |
|
| Q |
116 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31218665 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
31218764 |
T |
|
| Q |
216 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaatgtcct |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31218765 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctgaatgtcct |
31218832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 47896661 - 47896397
Alignment:
| Q |
16 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47896661 |
tgaaacaaacaaataaagactaactaatatttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattgtctcaccaca |
47896562 |
T |
|
| Q |
116 |
acacgcccctgagactaaacttacgtctgatgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47896561 |
acacgc---tgagactaaacttacgtctgatgccatctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatg |
47896465 |
T |
|
| Q |
216 |
gggtgggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaatgtcct |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47896464 |
gggtgggtggagcaactgttgaccttttctttttgcgcgcaccagctgtgataccgtctgaatgtcct |
47896397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 4958167 - 4958272
Alignment:
| Q |
181 |
ccgcctgagattgtatcgcttctcccctgtaaatggggt---gggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaa |
277 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| | | || |||||||||||||||||| |||||||| |||||| |||||||||| || ||||||| |
|
|
| T |
4958167 |
ccgcctgaggttgtaacgcttctcccctgtaacttgtgttgtgggtggagcaactgttgaccttttcttcttgcgcccaccagctgttgaactgtctgaa |
4958266 |
T |
|
| Q |
278 |
tgtcct |
283 |
Q |
| |
|
|||||| |
|
|
| T |
4958267 |
tgtcct |
4958272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 4957794 - 4957824
Alignment:
| Q |
34 |
actaactaatatttcaatttgaagcaacctt |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4957794 |
actaactaatatttcaatttgaagcaacctt |
4957824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University