View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2930_low_23 (Length: 297)

Name: NF2930_low_23
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2930_low_23
NF2930_low_23
[»] chr3 (7 HSPs)
chr3 (3-297)||(9494214-9494508)
chr3 (171-294)||(9353515-9353644)
chr3 (215-295)||(9377744-9377830)
chr3 (215-294)||(9433524-9433606)
chr3 (242-296)||(9402902-9402956)
chr3 (242-296)||(9421141-9421195)
chr3 (98-126)||(9395761-9395789)
[»] chr6 (1 HSPs)
chr6 (242-297)||(7042154-7042209)
[»] chr1 (2 HSPs)
chr1 (237-297)||(18991944-18992007)
chr1 (256-292)||(4440546-4440582)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 9494508 - 9494214
Alignment:
Q  3 ggttttttctcgttgcccatgaaggcaacgatcttttcagggtacatgtagtcagagagcaaggaatcatcatgaacaatgaaatcggttcctaaatgga 102  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9494508 ggttttttctcgttgcccgtgaaagcaacgatcttttcagggtacatgtagtcatagagcaaggaatcatcatgaacaatgaaatcggttcctaaatgga 9494409  T
Q  103 tgacagagagtttgttgaagtcgatggagtgaagtgaatcaaaaggtgattgatatgagatgagtgagtttaagatttgggttttgccatttgagtattg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9494408 tgacagagagtttgttgaagtcgatggagtgaagtgaatcaaaaggtgattgatatgagatgagtgggtttaagatttgggttttgccatttgagtattg 9494309  T
Q  203 gcgaattcttaccaaccaaggacgatgacgaattagggtttgttgttgttcatgtggtggtttgatgaggaagaaactgcgtttggagaggtaac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9494308 gcgaattcttaccaaccaaggacgatgacgaattagggtttgttgttgttcatgtggtggtttgatgaggaagaaactgcatttggagaggtaac 9494214  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 9353515 - 9353644
Alignment:
Q  171 tttaagatttgggttttgccatttgagtattggcgaattcttaccaaccaaggacgatgacgaattagggttt------gttgttgttcatgtggtggtt 264  Q
    ||||||| ||| ||||| ||| |||||| ||||  ||||| || ||||||||| ||| |||||||||||||||      |||||||||| ||||||||||    
T  9353515 tttaagagttgagttttaccacttgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggtttcttgttgttgttgttcttgtggtggtt 9353614  T
Q  265 tgatgaggaagaaactgcgtttggagaggt 294  Q
    ||| ||||||||| ||||||||||||||||    
T  9353615 tgacgaggaagaagctgcgtttggagaggt 9353644  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 9377744 - 9377830
Alignment:
Q  215 caaccaaggacgatgacgaattagggttt------gttgttgttcatgtggtggtttgatgaggaagaaactgcgtttggagaggta 295  Q
    |||||||||||||  ||||||||||||||      |||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  9377744 caaccaaggacgacaacgaattagggtttcttgttgttgttgttcttgtggtggtttgacgaggaagaagctgcgtttggagaggta 9377830  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 9433524 - 9433606
Alignment:
Q  215 caaccaaggacgatgacgaattagggtttgttgtt---gttcatgtggtggtttgatgaggaagaaactgcgtttggagaggt 294  Q
    ||||||||||||| ||  |||| |||||||| |||   |||| |||| ||||||||||||||||||||||| |||||||||||    
T  9433524 caaccaaggacgaagattaattcgggtttgtcgttcttgttcttgtgttggtttgatgaggaagaaactgcttttggagaggt 9433606  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 9402902 - 9402956
Alignment:
Q  242 ttgttgttgttcatgtggtggtttgatgaggaagaaactgcgtttggagaggtaa 296  Q
    ||||| |||||| |||| ||||||||||||| |||||||  ||||||||||||||    
T  9402902 ttgttcttgttcctgtgatggtttgatgaggtagaaactatgtttggagaggtaa 9402956  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 9421141 - 9421195
Alignment:
Q  242 ttgttgttgttcatgtggtggtttgatgaggaagaaactgcgtttggagaggtaa 296  Q
    ||||| |||||| |||| ||||||||||||| |||||||  ||||||||||||||    
T  9421141 ttgttcttgttcctgtgatggtttgatgaggtagaaactatgtttggagaggtaa 9421195  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 9395761 - 9395789
Alignment:
Q  98 atggatgacagagagtttgttgaagtcga 126  Q
    |||||||||||||||||||||||||||||    
T  9395761 atggatgacagagagtttgttgaagtcga 9395789  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 7042154 - 7042209
Alignment:
Q  242 ttgttgttgttcatgtggtggtttgatgaggaagaaactgcgtttggagaggtaac 297  Q
    |||||||||||  |||||||||||||||||||||||| |  |||||||||||||||    
T  7042154 ttgttgttgttgttgtggtggtttgatgaggaagaaattatgtttggagaggtaac 7042209  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 18991944 - 18992007
Alignment:
Q  237 agggtttgttgttgttcatgt---ggtggtttgatgaggaagaaactgcgtttggagaggtaac 297  Q
    ||||||||||||||||| |||   |||||||||||||||||||   || |||||||||||||||    
T  18991944 agggtttgttgttgttcttgttgaggtggtttgatgaggaagatgttgtgtttggagaggtaac 18992007  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 4440546 - 4440582
Alignment:
Q  256 gtggtggtttgatgaggaagaaactgcgtttggagag 292  Q
    |||||||||||||||||||||||  ||||||||||||    
T  4440546 gtggtggtttgatgaggaagaaagagcgtttggagag 4440582  T

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