View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2930_low_25 (Length: 287)

Name: NF2930_low_25
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2930_low_25
NF2930_low_25
[»] chr3 (14 HSPs)
chr3 (11-274)||(9493951-9494214)
chr3 (70-227)||(9370461-9370618)
chr3 (99-227)||(9348836-9348964)
chr3 (107-197)||(9403062-9403152)
chr3 (107-197)||(9421301-9421391)
chr3 (65-193)||(9341535-9341660)
chr3 (113-227)||(9344688-9344802)
chr3 (89-179)||(9433693-9433783)
chr3 (125-222)||(9616652-9616749)
chr3 (65-227)||(9449099-9449255)
chr3 (125-227)||(9654583-9654685)
chr3 (125-168)||(9625759-9625802)
chr3 (71-162)||(9377916-9378004)
chr3 (126-227)||(9645590-9645691)
[»] chr2 (1 HSPs)
chr2 (99-222)||(20693478-20693601)
[»] chr1 (3 HSPs)
chr1 (67-179)||(229880-229992)
chr1 (71-197)||(8813588-8813714)
chr1 (113-227)||(235959-236073)
[»] chr6 (7 HSPs)
chr6 (111-205)||(28133084-28133178)
chr6 (111-205)||(28177186-28177280)
chr6 (116-205)||(28177061-28177150)
chr6 (116-227)||(28219806-28219917)
chr6 (111-205)||(28219953-28220047)
chr6 (119-205)||(9171671-9171757)
chr6 (134-167)||(212800-212833)
[»] scaffold0038 (2 HSPs)
scaffold0038 (116-227)||(20304-20415)
scaffold0038 (111-205)||(20451-20545)
[»] chr5 (1 HSPs)
chr5 (71-169)||(18571864-18571962)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 9494214 - 9493951
Alignment:
Q  11 cagacgaatggcatagtgttatcgttgttgatggaatcagaaagagattggaaattgaagagtggaaatttgaagggtaaaatgttaagatggtgctttc 110  Q
    |||| |||||| ||||||||||||||| ||||||||||| | |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  9494214 cagaagaatggaatagtgttatcgttgatgatggaatcaaatagagatcggaatttgaagagtggaaattcgaagggtaaaatgttaagatggtgctttc 9494115  T
Q  111 gaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcgg 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9494114 gaatggaagaagagcgccaattgcaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcgg 9494015  T
Q  211 gagtgcagaccaatctgacatcgccggcgccatggatgatgccgctgcgtttgctttctgcttc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9494014 gagtgcagaccaatctgacatcgccggcgccatggatgatgccgctgcgtttgctttctgcttc 9493951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 9370461 - 9370618
Alignment:
Q  70 gagtggaaatttgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttca 169  Q
    |||||| ||||||| |||| || | | ||||||||| ||| ||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||     
T  9370461 gagtgggaatttgatgggtgaagtttgaagatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcg 9370560  T
Q  170 gtgtcgattccctgtgatatcagattcacaagatccatcgggagtgcagaccaatctg 227  Q
     |||||||    |||||||||| | ||||||| |||||||||||||||||||||||||    
T  9370561 ttgtcgatgaattgtgatatcaaactcacaagctccatcgggagtgcagaccaatctg 9370618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 9348836 - 9348964
Alignment:
Q  99 gatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcac 198  Q
    ||||||| ||| ||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||  |||| ||    |||||||||| | ||||    
T  9348836 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcac 9348935  T
Q  199 aagatccatcgggagtgcagaccaatctg 227  Q
    ||| ||||| |||||||||||||||||||    
T  9348936 aagctccattgggagtgcagaccaatctg 9348964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 9403062 - 9403152
Alignment:
Q  107 tttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattca 197  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||  |||||  || |||||||||||||    
T  9403062 tttcggatggaagaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcggtggtgattcgttgcgatatcagattca 9403152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 9421301 - 9421391
Alignment:
Q  107 tttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattca 197  Q
    ||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||  |||||  || |||||||||||||    
T  9421301 tttcggatggaagatgaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcggtggtgattcgttgcgatatcagattca 9421391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 193
Target Start/End: Original strand, 9341535 - 9341660
Alignment:
Q  65 ttgaagagtggaaatttgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcga 164  Q
    |||| |||||| |||||||||||||| ||||||   ||||| ||| | ||||| ||||| |||||||||||||| |  |||||||| |||||||||||||    
T  9341535 ttgaggagtgggaatttgaagggtaagatgtta---tggtgatttgggatggaggaagaacgccaattggaacaaatggatcgaaatcgaatgagatcga 9341631  T
Q  165 tttcagtgtcgattccctgtgatatcaga 193  Q
    |||| ||||| ||||  || |||||||||    
T  9341632 tttcggtgtcaattcgttgcgatatcaga 9341660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 9344688 - 9344802
Alignment:
Q  113 atggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcggga 212  Q
    |||||||||||| ||||||||||||| || |||||||||||||||||||| | |||| ||||||  |  || ||||| ||||| | ||||||| | ||||    
T  9344688 atggaagaagagtgccaattggaacaaacagatcgaaagcgaatgagatcaagttcattgtcgaggcgttgcgatataagattgagaagatcctttggga 9344787  T
Q  213 gtgcagaccaatctg 227  Q
    || ||||||||||||    
T  9344788 gttcagaccaatctg 9344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 9433693 - 9433783
Alignment:
Q  89 aaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattc 179  Q
    ||||||| |||||| || ||| | || || ||||| ||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||    
T  9433693 aaaatgtcaagatgatgattttggatcgaggaagaacgccaatgggaacaaactgatcggaagcgaatgagatcaatttcagtgtcgattc 9433783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 9616749 - 9616652
Alignment:
Q  125 cgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcgggagtgcagacca 222  Q
    |||||||||||||| || ||||||||||||||||||||||| |   |||| ||||| | |||||||||||| | ||| ||| | ||||| ||||||||    
T  9616749 cgccaattggaacataccgatcgaaagcgaatgagatcgatcttgttgtcaattccttttgatatcagatttagaagctcccttgggagagcagacca 9616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 227
Target Start/End: Original strand, 9449099 - 9449255
Alignment:
Q  65 ttgaagagtggaaatttgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcga 164  Q
    |||| |||||| ||||||||||||||||||||| |||| |   || | |||||||    || |||| ||||||| ||||||||||| |||||||||||||    
T  9449099 ttgaggagtgggaatttgaagggtaaaatgttatgatgat---ttgggatggaagt---gcaccaaatggaacaaactgatcgaaaacgaatgagatcga 9449192  T
Q  165 tttcagtgtcgattccctgtgatatcagattcacaagatccatcgggagtgcagaccaatctg 227  Q
     |||| ||||||  |  |||||||| ||||| | ||| ||| | ||||||  |||||||||||    
T  9449193 gttcattgtcgagcctttgtgatatgagattgagaagttcctttgggagttgagaccaatctg 9449255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 9654685 - 9654583
Alignment:
Q  125 cgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcgggagtgcagaccaat 224  Q
    |||||||||||||| || |||||||||||||| | |||||||||  |||||||||  | ||| |||| ||||| ||| ||| |||||||  ||||||| |    
T  9654685 cgccaattggaacaaaccgatcgaaagcgaatcatatcgatttcgatgtcgattcgttctgagatcatattcagaagctccttcgggagatcagaccagt 9654586  T
Q  225 ctg 227  Q
    |||    
T  9654585 ctg 9654583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 9625802 - 9625759
Alignment:
Q  125 cgccaattggaacagactgatcgaaagcgaatgagatcgatttc 168  Q
    |||||||||||||| || ||||||||||| ||||||||||||||    
T  9625802 cgccaattggaacaaacagatcgaaagcgtatgagatcgatttc 9625759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 9377916 - 9378004
Alignment:
Q  71 agtggaaatttgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatc 162  Q
    ||||| |||| ||||||||||||||||   ||||  ||| |||||| ||||||| ||||| | ||||| || |||||||| |||||||||||    
T  9377916 agtgggaattggaagggtaaaatgtta---tggtcatttggaatgggagaagagtgccaagttgaacaaaccgatcgaaaacgaatgagatc 9378004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 9645691 - 9645590
Alignment:
Q  126 gccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcgggagtgcagaccaatc 225  Q
    ||||||||||||| || |||||||||||||| | || ||||||  |||||||||  | ||| |||| ||||| ||| ||| |||||||  ||||||| ||    
T  9645691 gccaattggaacaaaccgatcgaaagcgaatcatattgatttcgatgtcgattcgttctgagatcatattcagaagctccttcgggagatcagaccagtc 9645592  T
Q  226 tg 227  Q
    ||    
T  9645591 tg 9645590  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 20693601 - 20693478
Alignment:
Q  99 gatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcac 198  Q
    ||||||| ||| | ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||  |||||||    |  |||||||||||||     
T  20693601 gatggtgatttgggatggaggaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgagttcgctgtcgatgtgtttggatatcagattcag 20693502  T
Q  199 aagatccatcgggagtgcagacca 222  Q
    ||||||| |||| ||| |||||||    
T  20693501 aagatccttcggcagttcagacca 20693478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 229880 - 229992
Alignment:
Q  67 gaagagtggaaatttgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatt 166  Q
    |||| |||| ||||||| || ||| |||| | | ||||| ||| | ||||||||||| |||||||||||||||| |||||| |||||||||| |||||||    
T  229880 gaagggtgggaatttgatggttaacatgtcacggtggtgatttgggatggaagaagaacgccaattggaacagattgatcggaagcgaatgatatcgatt 229979  T
Q  167 tcagtgtcgattc 179  Q
    ||  |||||||||    
T  229980 tcgttgtcgattc 229992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 8813714 - 8813588
Alignment:
Q  71 agtggaaatttgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcag 170  Q
    ||||| ||||||| || |||||||||| | ||||| ||| | |||||||||||  ||||||||| ||| | |||||| ||||||||||||||||||||      
T  8813714 agtgggaatttgatggttaaaatgttacggtggtgatttgggatggaagaagaatgccaattggtacaaattgatcggaagcgaatgagatcgatttcgt 8813615  T
Q  171 tgtcgattccctgtgatatcagattca 197  Q
    |||||| |   || |||||||||||||    
T  8813614 tgtcgaattgttgcgatatcagattca 8813588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 235959 - 236073
Alignment:
Q  113 atggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcggga 212  Q
    ||||||||||| |||||||||| ||| | |||||| ||||||||||||||||||||  |||| |||   | |||||| ||||||| ||||||| | || |    
T  235959 atggaagaagaacgccaattggtacaaattgatcggaagcgaatgagatcgatttcgttgtcaatttgttttgatataagattcagaagatcctttggca 236058  T
Q  213 gtgcagaccaatctg 227  Q
    ||  |||||||||||    
T  236059 gtttagaccaatctg 236073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 28133084 - 28133178
Alignment:
Q  111 gaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatcc 205  Q
    |||||||||||||| |||||||| |||| ||||||| ||| |||||| |||||| |||| || ||| ||  |||||||||||||| | |||||||    
T  28133084 gaatggaagaagagtgccaattgaaacaaactgatcaaaaacgaatgtgatcgagttcattgccgagtcgttgtgatatcagattgagaagatcc 28133178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 28177186 - 28177280
Alignment:
Q  111 gaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatcc 205  Q
    |||||||||||||| | ||||||||||  ||  ||||||| ||||||||||||| |||| |||||| ||  |||||||||||||| | |||||||    
T  28177186 gaatggaagaagagtgtcaattggaacgaacatatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcc 28177280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 28177150 - 28177061
Alignment:
Q  116 gaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatcc 205  Q
    ||||||||| ||||||||||||| || |||||||| | ||||||||||| |||| |||||| |   |||||||||||||| | |||||||    
T  28177150 gaagaagagtgccaattggaacaaacagatcgaaaacaaatgagatcgacttcactgtcgagttgttgtgatatcagattgagaagatcc 28177061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 28219917 - 28219806
Alignment:
Q  116 gaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcgggagtg 215  Q
    ||||||||| ||||||||||| | || ||||||||  |||||||||||| |||| |||||| |   |||||||||||||| | ||||||| | || |||     
T  28219917 gaagaagagtgccaattggaataaacagatcgaaaatgaatgagatcgacttcactgtcgagttgttgtgatatcagattgagaagatcctttggaagtt 28219818  T
Q  216 cagaccaatctg 227  Q
     |||||||||||    
T  28219817 gagaccaatctg 28219806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 28219953 - 28220047
Alignment:
Q  111 gaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatcc 205  Q
    |||| ||||||||| | |||||| |||  || |||||||| ||||||||||||| |||| |||||| ||  |||||||||||||| | |||||||    
T  28219953 gaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcc 28220047  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 9171671 - 9171757
Alignment:
Q  119 gaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatcc 205  Q
    |||||||||||  | ||||| |||||| |||||||||||||||||| ||||   | |||||  |||||||||||||| | |||||||    
T  9171671 gaagagcgccatgttgaacaaactgattgaaagcgaatgagatcgacttcatcatagattcgttgtgatatcagattgagaagatcc 9171757  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 212833 - 212800
Alignment:
Q  134 gaacagactgatcgaaagcgaatgagatcgattt 167  Q
    ||||||| ||||||||||||||||||||||||||    
T  212833 gaacagattgatcgaaagcgaatgagatcgattt 212800  T

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Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 20415 - 20304
Alignment:
Q  116 gaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatccatcgggagtg 215  Q
    ||||||||| ||||||||||| | || ||||||||  |||||||||||| |||| |||||| |   |||||||||||||| | ||||||| | || |||     
T  20415 gaagaagagtgccaattggaataaacagatcgaaaatgaatgagatcgacttcactgtcgagttgttgtgatatcagattgagaagatcctttggaagtt 20316  T
Q  216 cagaccaatctg 227  Q
     |||||||||||    
T  20315 gagaccaatctg 20304  T

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Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 20451 - 20545
Alignment:
Q  111 gaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcacaagatcc 205  Q
    |||| ||||||||| | |||||| |||  || |||||||| ||||||||||||| |||| |||||| ||  |||||||||||||| | |||||||    
T  20451 gaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcc 20545  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 18571864 - 18571962
Alignment:
Q  71 agtggaaatttgaagggtaaaatgttaagatggtgctttcgaatggaagaagagcgccaattggaacagactgatcgaaagcgaatgagatcgatttca 169  Q
    ||||| |||||||||||||||||||||  ||| || ||| | ||||| ||||| ||||| |||| ||| ||  |||| |||||||||||||||| ||||    
T  18571864 agtgggaatttgaagggtaaaatgttagaatgatgatttgggatggaggaagaacgccatttgggacaaaccaatcggaagcgaatgagatcgagttca 18571962  T

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