View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_3 (Length: 725)
Name: NF2930_low_3
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 18 - 710
Target Start/End: Original strand, 36676390 - 36677082
Alignment:
| Q |
18 |
caaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagcca |
117 |
Q |
| |
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|||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
36676390 |
caaaattggatatttttggttcaaagttctcatctagcaatatgcattctgaacatatgctaaaatgcactatgcccaaatcgcatgtatgatgcagcca |
36676489 |
T |
|
| Q |
118 |
tgataaccctcttgctattccaagtgcaatgtttaccctatgatgccatttcaatcttatgacttcactttgcaaaggatgcaaccatttggaaagcctc |
217 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36676490 |
tgataaccctcttgctattccaaatgcaatgttgaccctgtcatgccatttcaatcttatgacttcactttccaaaggatgcaaccatttggaaagcctc |
36676589 |
T |
|
| Q |
218 |
ccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaagcatgggaactatatttttgtgtctgtacctactcataatcg |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676590 |
ccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaagcatgggaactatatttttgtgtctgtacctactcataatcg |
36676689 |
T |
|
| Q |
318 |
ttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaatagctagtaattgaccattaggcagaaatccttggtacatcattcc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676690 |
ttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaacagctagtaattgaccattaggcagaaatccttggtacatcattcc |
36676789 |
T |
|
| Q |
418 |
catctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaatttagtctctccattagtata |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676790 |
catctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaatttagtctctccattagtata |
36676889 |
T |
|
| Q |
518 |
gagatctgtggatgcatgtgtaattgttttttacaacagacaatatatactgatttacctnnnnnnncaattcaaaacaagaagtgtttaaaaagataga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
36676890 |
gagatctgtggatgcatgtgtaattgttttttacaacagacaatatatactgatttacctaaaaaaacaattcaaaacaagaagtgtttaaaaagataga |
36676989 |
T |
|
| Q |
618 |
actatttaaagaagagaatgagtacctctttggtttctttgtgtacaatccacgaatgtaacaattggtgcatctgatcagctaccatctgtg |
710 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676990 |
actatttaaagaacagaatgagtacctctttggtttctttgtgtacaatccacgaatgtaacaattggtgcatctgatcagctaccatctgtg |
36677082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 36673635 - 36674151
Alignment:
| Q |
18 |
caaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagcca |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |
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|
| T |
36673635 |
caaaattggatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcacagctatgatgcagcca |
36673734 |
T |
|
| Q |
118 |
tgataaccctcttgctattccaagtgcaatgtttaccctatgatgccatttcaatcttatgacttcactttgcaaaggatgcaaccatttggaaagcctc |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
36673735 |
tgataaccctcttgctattccaagtgcaatgttgaccctttgatgccatttcaatcttatgacttcactttccgaaggatgcaaccatttggaaagcctt |
36673834 |
T |
|
| Q |
218 |
ccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaagcatgggaactatatttttgtgtctgtacctactcataatcg |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||| ||| || ||||| |
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| T |
36673835 |
ccatttgacatgtatgcatatgctaaaacctgttcctttcctttaatgcagaacccaagcaggggaactatatttttttgtctgtacttacacaaaatcg |
36673934 |
T |
|
| Q |
318 |
ttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaatagctagtaattgaccattaggcagaaatccttggtacatcattcc |
417 |
Q |
| |
|
||||||| ||||||| |||||||||||| | ||||||| |||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
36673935 |
ttgtttccaaaaggaactgccttttaaatagccgagagtcaaatattctcttaatagccagtaactgaccattaggaagaaatccttggtacatcattcc |
36674034 |
T |
|
| Q |
418 |
catctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaatttagtctctccattagtata |
517 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| ||||||||||||||| || | |||||||||||||||||| |
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|
| T |
36674035 |
catctttcctaccccaatggcattgtcgacagcgaaacaatcagttgcgtcacacagttcatccaaccatattgttaaagtcagtctctccattagtata |
36674134 |
T |
|
| Q |
518 |
gagatctgtggatgcat |
534 |
Q |
| |
|
| |||||||| |||||| |
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|
| T |
36674135 |
gtgatctgtgaatgcat |
36674151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 36684063 - 36684541
Alignment:
| Q |
18 |
caaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagcca |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| || ||||||| ||||| |
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|
| T |
36684063 |
caaaattggatattttgggttcaaaattctcatctagcaatatgcattgtgaatatatattaaaatgcactatgcccaaatcacagctatgatggagcca |
36684162 |
T |
|
| Q |
118 |
tgataaccctcttgctattccaagtgcaatgtttaccctatgatgccatttcaatcttatgacttcactttgcaaaggatgcaaccatttggaaagcctc |
217 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||| | | ||||||||| || ||||||||||||| |||||| | |||||||||||||||||| |
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|
| T |
36684163 |
tgataatcctcttgctaatccaagtgcaatgttgaccctctcaggccatttcagtcggatgacttcacttttcaaagggtacaaccatttggaaagcctt |
36684262 |
T |
|
| Q |
218 |
ccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaagcatgggaactatatttttgtgtctgtacctactcataatcg |
317 |
Q |
| |
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||||||||||||||| |||||||||||| | |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
36684263 |
ccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaagcatgggaactatatttttatgtctgtacctactcataatag |
36684362 |
T |
|
| Q |
318 |
ttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaatagctagtaattgaccattaggcagaaatccttggtacatcattcc |
417 |
Q |
| |
|
||||||||||||||| |||||||| ||| | | || ||| |||||||||||| |||||||| |||||||| || ||| ||| || ||||||||||| |
|
|
| T |
36684363 |
ttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagatttccctgatacatcattcc |
36684462 |
T |
|
| Q |
418 |
catctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaa |
496 |
Q |
| |
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||||||||| ||||||||||| ||||| | ||||||||| ||||||| ||| || |||||||| ||||||||||||||| |
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|
| T |
36684463 |
catctttcccaccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaa |
36684541 |
T |
|
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