View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_30 (Length: 253)
Name: NF2930_low_30
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 14622323 - 14622101
Alignment:
| Q |
12 |
tgagatgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagc |
111 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14622323 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaacccaagttccaagc |
14622224 |
T |
|
| Q |
112 |
tgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaa |
211 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622223 |
tgcggctacgctgtaatacgcacaaggaatgttgaaactcttggttatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaa |
14622124 |
T |
|
| Q |
212 |
gttttgagtatctcggtaacacg |
234 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
14622123 |
gttttgagtatctcggtaacacg |
14622101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 14588665 - 14588443
Alignment:
| Q |
12 |
tgagatgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagc |
111 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| |
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| T |
14588665 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaagttccgagc |
14588566 |
T |
|
| Q |
112 |
tgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaa |
211 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14588565 |
tgcgcctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaa |
14588466 |
T |
|
| Q |
212 |
gttttgagtatctcggtaacacg |
234 |
Q |
| |
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||||||| |||||| |||||||| |
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| T |
14588465 |
gttttgaatatctcagtaacacg |
14588443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 11530203 - 11529987
Alignment:
| Q |
16 |
atgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgct |
115 |
Q |
| |
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|||||||||||||| ||||||| |||| |||||||| |||||| |||||||| | || | ||| |||||||||||||||||| | ||||||||||| |
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| T |
11530203 |
atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagctgga |
11530104 |
T |
|
| Q |
116 |
gctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttt |
215 |
Q |
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| | |||||||| ||||||||||| || | || ||||||||||||||||||||||| | ||| |||| ||||||||||||||| ||| || |||| |
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| T |
11530103 |
acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcagactttgatgttt |
11530004 |
T |
|
| Q |
216 |
tgagtatctcggtaaca |
232 |
Q |
| |
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|||||||||| |||||| |
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| T |
11530003 |
tgagtatctcagtaaca |
11529987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 29954238 - 29954022
Alignment:
| Q |
16 |
atgaatggttgtttggaaaggagcccattttggtggactatacaagtctatgtgggttcgttcccttggtggattaaagaaacccaagttccaagctgct |
115 |
Q |
| |
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|||||||| |||||| |||||| |||| |||||||| ||| || ||||||| | || | ||| |||||||||| | |||| | ||||||||||| |
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| T |
29954238 |
atgaatggatgtttgaaaaggaacccactttggtgggctacacctatctatgttgatttgatcctttggtggatttgataaacatatgttccaagctggg |
29954139 |
T |
|
| Q |
116 |
gctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaagttt |
215 |
Q |
| |
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| ||| |||||| |||||||||||||||| || || ||||| |||||||||||||| | | | |||| | ||||||||||||||||| ||||||| |
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| T |
29954138 |
acaacgttgtaatgagcacaaggaatgttgaggcttttcgctattgacggtaaccaatcagctgcataatcatataaaacccaatcaggctttgaagttt |
29954039 |
T |
|
| Q |
216 |
tgagtatctcggtaaca |
232 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
29954038 |
tgagtatctcagtaaca |
29954022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 51370276 - 51370431
Alignment:
| Q |
77 |
tcccttggtggattaaagaaacccaagttccaagctgctgctacgctgtaatacgcacaaggaatgttgaaactcttggctatcgacggtaaccaatccg |
176 |
Q |
| |
|
||||| |||||||||||||||| | |||| ||||||| || ||||||| |||||||||||||| | || ||||| || | ||| |||||||| | |
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| T |
51370276 |
tccctaggtggattaaagaaacatacgttcaaagctgcgagtatactgtaatgagcacaaggaatgttaaggcttttggcaattgccggcaaccaatcag |
51370375 |
T |
|
| Q |
177 |
atactacatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaaca |
232 |
Q |
| |
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| | |||| ||||||||||||||||||| |||||||||||||| || |||||| |
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| T |
51370376 |
ctgcacaatcatagaaaacccaatcaggctttgaagttttgagtatatcagtaaca |
51370431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 1361595 - 1361556
Alignment:
| Q |
12 |
tgagatgaatggttgtttggaaaggagcccattttggtgg |
51 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
1361595 |
tgagatgaatggttgtttgaaaaggaacccattttggtgg |
1361556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 1357291 - 1357250
Alignment:
| Q |
184 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctc |
225 |
Q |
| |
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|||| |||||||||||||||| || ||||||||||||||||| |
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| T |
1357291 |
atcatagaaaacccaatcaggatttgaagttttgagtatctc |
1357250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 20492205 - 20492157
Alignment:
| Q |
184 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaaca |
232 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||| || |||||| |
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|
| T |
20492205 |
atcatagaaaacccaatcaggctttgaagttttaagtatttcagtaaca |
20492157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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