View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_36 (Length: 240)
Name: NF2930_low_36
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1842292 - 1842516
Alignment:
| Q |
1 |
aatctcatattttacaataaatttaatttcatgagtgtattcgttgctactttcaatcatttcatctgactgttgatttgtgtgtgcaggcttaatgtat |
100 |
Q |
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| T |
1842292 |
aatctcatattttacaataaatttaatttcatgagtgtattccctgctactttcaatcatttcatctgactgctgatttgtgtgggcaggcttaatgtat |
1842391 |
T |
|
| Q |
101 |
ttatgtaaatgattgatcaacatgttgtttctttgggttagttaaagatcaattacggacgcataaggataaggcataatgcattagatattgcatcaga |
200 |
Q |
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| T |
1842392 |
ttatgtaaatgattgaccaacatgttgtttctttgggttagttaaagatcaattacggacgcataaggataaggcatcatgcattagatactgcatcaga |
1842491 |
T |
|
| Q |
201 |
tgaaaccttagatatgactacaact |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
1842492 |
tgaaaccttagatatgactacaact |
1842516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1840466 - 1840238
Alignment:
| Q |
1 |
aatctcatattttacaataaatttaatttcatgagtgtattcgttgctactttcaatcatttcatctgactgttgatttgtgtgtg----caggcttaat |
96 |
Q |
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| T |
1840466 |
aatctcatattttacaataaatttaatttcatgagtgtattcgttgctactttcaatcatttcatctgactgctgacttgtgtgtgtgtgcaggctttat |
1840367 |
T |
|
| Q |
97 |
gtatttatgtaaatgattgatcaacatgttgtttctttgggttagttaaagatcaattacggacgcataaggataaggcataatgcattagatattgcat |
196 |
Q |
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| T |
1840366 |
gtatttatgtaaatgattgaccaatatgttgtttccttgggtaagttcaagatgaattacggacgcagaaggataaggcatcagacaatagatattgcat |
1840267 |
T |
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| Q |
197 |
cagatgaaaccttagatatgactacaact |
225 |
Q |
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| T |
1840266 |
cagatgaaaccttagctatgactacaact |
1840238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41379705 - 41379929
Alignment:
| Q |
1 |
aatctcatattttacaataaatttaatttcatgagtgtattcgttgctactttcaatcatttcatctgactgttgatttgtg--tgtgcaggcttaatgt |
98 |
Q |
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| T |
41379705 |
aatctaatattttacaataaatttaatttcatgagtgtatttgttgctactttcattcatttcagctgactgctgatttgtgtgtgtgcaggcttaatgt |
41379804 |
T |
|
| Q |
99 |
atttatgtaaatgattgatcaacatgttgtttctttgggttagttaaagatcaattacggacgcataaggataaggcataatgcattagatattgcatca |
198 |
Q |
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| T |
41379805 |
atttatgtaaataattgaccaatatgttgtttccttgggttagttcaagatgaattaccgacgcagaaggataaggcatcagacattagatattgcatca |
41379904 |
T |
|
| Q |
199 |
gatgaaaccttagatatgactacaa |
223 |
Q |
| |
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| T |
41379905 |
gatgaaaccttagatatgactacaa |
41379929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 18635090 - 18634874
Alignment:
| Q |
5 |
tcatattttacaataaatttaatttcatgagtgtattcgttgctactttcaatcatttcatctgactgttgatttgtgtgtgcaggcttaatgtatttat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
18635090 |
tcatattttacaataaatttaatttcatgagtgtatttgttgctactttcaatcatttcatctgactgctgatttgtgtgtgcatgcttaatgtatttat |
18634991 |
T |
|
| Q |
105 |
gtaaatgattgatcaacatgttgtttctttgggttagttaaagatcaattacggacgcataaggataaggcataatgcattagatattgcatcagatgaa |
204 |
Q |
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| T |
18634990 |
gtaaatgattgaccaaca---tgtttctttgggttagttaaagatcaattacggac-cataaggataaggcatcatgcattagatattgcattagatgaa |
18634895 |
T |
|
| Q |
205 |
accttagatatgactacaact |
225 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
18634894 |
accttatatatgactacaact |
18634874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 18636962 - 18637190
Alignment:
| Q |
1 |
aatctcatattttacaataaatttaatttcatgagtgtattcgttgctactttcaatcatttcatctgactgttgatttgtg----tgtgcaggcttaat |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
18636962 |
aatctcatattttacaataaatttaatttcatgagtgtattcgttgctactttcaatcatttcatctgactgctgacttgtgtgtgtgtgcaggcttaat |
18637061 |
T |
|
| Q |
97 |
gtatttatgtaaatgattgatcaacatgttgtttctttgggttagttaaagatcaattacggacgcataaggataaggcataatgcattagatattgcat |
196 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||| |||||| |||| ||||| ||||||||||||| ||||||||||||| | ||| |||||||||||| |
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| T |
18637062 |
gtatttatgtaaatgattgaccaatatgttgtttccttgggtaagttcaagattaattacggacgcagaaggataaggcatcaggcaatagatattgcat |
18637161 |
T |
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| Q |
197 |
cagatgaaaccttagatatgactacaact |
225 |
Q |
| |
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|||| |||||||||||||||| |||||| |
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| T |
18637162 |
cagaataaaccttagatatgacgacaact |
18637190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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