View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_40 (Length: 234)
Name: NF2930_low_40
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 8375061 - 8375268
Alignment:
| Q |
10 |
agcacagatcaaaattcttacctttgaaataagacagggacgatccctcctctatagattccaatcttttcccaagcaggttgtgccatatcaaaatgct |
109 |
Q |
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| T |
8375061 |
agcacagatcaaaattctaacctttgaaataagacagggacgatccctcctctatagattccaatcttttcccaagcaggttgtgccatatcaaaatgct |
8375160 |
T |
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| Q |
110 |
ttagaggtgggttgcaccaacctccatcgtcgtttggaagatcaaaatttggaggacagaaatttgtggctgttatggtaatagatcttccttttatgca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375161 |
ttagaggtgggttgcaccaacctccatcgtcgtttggaagatcaaaatttggaggacagaaatttgtggctgttatggtaatagatcttccttttatgca |
8375260 |
T |
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| Q |
210 |
ccatcttg |
217 |
Q |
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|||||||| |
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| T |
8375261 |
ccatcttg |
8375268 |
T |
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