View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_6 (Length: 447)
Name: NF2930_low_6
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 56165242 - 56165629
Alignment:
| Q |
19 |
ctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagcttgca |
118 |
Q |
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| T |
56165242 |
ctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagcttgca |
56165341 |
T |
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| Q |
119 |
gcagaattttgggttcaatatagtaaggaaagagatttaattaagaagtggaactttggaggttaatagcatattggtttacaccaagtctgttggtgtg |
218 |
Q |
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| T |
56165342 |
gcagaattttgggttcaatatagtaaggaaagagatttaattaagaagtggaactttggaggttaatagcatattggtttacaccaagtctgttggtgtg |
56165441 |
T |
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| Q |
219 |
ttttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaa |
318 |
Q |
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| T |
56165442 |
ttttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaa |
56165541 |
T |
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| Q |
319 |
agaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgcactgactttgcagcctgtaaacatcttccttcag |
406 |
Q |
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| T |
56165542 |
agaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgcactgactttgcagcctgtaaacatcttccttcag |
56165629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 220 - 406
Target Start/End: Original strand, 44263708 - 44263891
Alignment:
| Q |
220 |
tttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaaa |
319 |
Q |
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| T |
44263708 |
tttgccttccaaatccaaattcagtttcagcttcatcttgttcaacattctccatctctccg---atgcttttactaaaagcaagtttcttccatttgaa |
44263804 |
T |
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| Q |
320 |
gaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgcactgactttgcagcctgtaaacatcttccttcag |
406 |
Q |
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| T |
44263805 |
gaaacttttcttcttctcagccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcag |
44263891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 44262713 - 44262911
Alignment:
| Q |
23 |
tttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagcttgcagcag |
122 |
Q |
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| T |
44262713 |
tttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgttgttgttctgtttgtgtagttaagcgatttacagagcttgcagcag |
44262812 |
T |
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| Q |
123 |
aattttgggttcaatatagtaaggaaagagatttaattaagaagtggaactttggaggtt-aatagcatattggtttacaccaagtctgttggtgtgttt |
221 |
Q |
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| T |
44262813 |
agttttgggttcaatatagtaaggaaggagat----ctaaggagaggagctttggaggttaaatagcatattggtttacaccaagtctgttggtgtgttt |
44262908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 44259653 - 44259687
Alignment:
| Q |
110 |
gagcttgcagcagaattttgggttcaatatagtaa |
144 |
Q |
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| T |
44259653 |
gagcttgcagcagaattttgggttcaatatcgtaa |
44259687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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