View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_7 (Length: 447)
Name: NF2930_low_7
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 83 - 292
Target Start/End: Complemental strand, 16459553 - 16459341
Alignment:
| Q |
83 |
gtaacaattggagtaaaagtatgttaatcaaatgtagtatttgccaaattactgttttttacattatatttaccttaagatatttagtttttgtactatt |
182 |
Q |
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| T |
16459553 |
gtaacaattggagtaaaagtatgttaatcaact--agtttttgccaaattactcttttttacattatatttaccttaagatatctagtttttgtact--- |
16459459 |
T |
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| Q |
183 |
tcagtt--------cccacatagaacttgatctaaggcattatcagatcctacatactccttttcnnnnnnnacaaataacaagtgtaatagttgaaaag |
274 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
16459458 |
tcagttgacaaacacccacatagaacttgatctaaggcattatcagattctacatactccttttctttttttacaaataacaagtgtaatagtttaaaag |
16459359 |
T |
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| Q |
275 |
tttatgtacgtggattaa |
292 |
Q |
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|||||||| ||||||||| |
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| T |
16459358 |
tttatgtatgtggattaa |
16459341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 16459296 - 16459214
Alignment:
| Q |
340 |
ggagggggtattattaaactcaaaacgtttagatgagatagcacaaatcttttatatcttaactaaaatcgtagttttgaata |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
16459296 |
ggagggggtattattaaactcaaaacgtttagatgagatagcacaattctcttatatcttaactaagatcgtagttttgaata |
16459214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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