View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2930_low_8 (Length: 423)
Name: NF2930_low_8
Description: NF2930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2930_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 17802915 - 17803318
Alignment:
| Q |
17 |
aagataaagaagttcaatgggatggaaatgcattgaagaatatggaaaacctcaagatactggtaatagagaaaactcgcttttccagaggacctaatca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17802915 |
aagataaagaagttcaatgggatggaaatgcattgaagaatatggaaaacctcaagatactggtaatagagaaaactcgcttttccagaggacctaatca |
17803014 |
T |
|
| Q |
117 |
tcttccaaaaagtttaagagtgctaaaatggtttgattatcctgaatcgtcattgccggctcattataatccaaagaaacttgtcatacttgacctgtct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17803015 |
tcttccaaaaagtttaagagtgctaaaatggtttgattatcctgaatcgtcattgccggctcattataatccaaagaaacttgtcatacttgacctgtct |
17803114 |
T |
|
| Q |
217 |
gactctacgggactttttacatttggcaatcaaatgatcatggtattgatattttgtctgttttctgagttttaataagacctagctactgaaatattca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17803115 |
gactctacgggactttttacatttggcaatcaaatgatcatggtattgatattttgtctgttttctgagttttaataagacctagctactgaaatattca |
17803214 |
T |
|
| Q |
317 |
taaaatagtattgtttctatttttcagaaatttaagtctttgaaggaaatgaagataagcaagtgtcaatccttaaagaaagtacctgacatctctgctg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
17803215 |
taaaatagtattgtttctatttttcagaaatttaagtctttgaaggaaatgaagataagcaagtgtcaatccttaaagaaagtacctgacatgtctggtg |
17803314 |
T |
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| Q |
417 |
ctcc |
420 |
Q |
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|||| |
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| T |
17803315 |
ctcc |
17803318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 17792277 - 17792663
Alignment:
| Q |
17 |
aagataaagaagttcaatgggatggaaatgcattgaagaatatggaaaacctcaagatactggtaatagagaaaactcgcttttccagaggacctaatca |
116 |
Q |
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|||||||| |||| || || ||| ||||||||||||||||||||||||||||||| ||||||||||| || || | ||||||||| |||||||||||| |
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| T |
17792277 |
aagataaaaaagtccagtgcgatagaaatgcattgaagaatatggaaaacctcaaaatactggtaattgaagaagcatgcttttccaaaggacctaatca |
17792376 |
T |
|
| Q |
117 |
tcttccaaaaagtttaagagtgctaaaatggtttgattatcctgaatcgtcattgccggctcattataatccaaagaaacttgtcatacttgacctgtct |
216 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||| ||| | |||||||||||||||||||||||||| || |
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| T |
17792377 |
tctcccaaaaagtttaagagtgctaaaatggtgtgattatcctgaatcatcacttccggctgattttgatccaaagaaacttgtcatacttgacttg--- |
17792473 |
T |
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| Q |
217 |
gactctacgggactttttacatttggcaatcaaatgatcatggtattgatattttgtctgttttctgagtttta---ataagacctagctactgaaatat |
313 |
Q |
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|||| ||| | ||||||||| | |||||||||||||||||||||||||||| | | | |||||||||||| ||||||| |||||| | ||| || |
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| T |
17792474 |
---tctatgggccattttacattcagaaatcaaatgatcatggtattgatattttatttttgttctgagttttaattataagacatagctagttaaaaat |
17792570 |
T |
|
| Q |
314 |
tcataaaatagt-attgtttctatttttcagaaatttaagtctttgaaggaaatgaagataagcaagtgtcaatccttaaagaaagtacctga |
405 |
Q |
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|||||||||||| |||||| | ||| ||||||| |||||||||| |||||||||| ||||| ||| ||| ||||||| |||||||||| |
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| T |
17792571 |
tcataaaatagtctttgtttgcgtcttttagaaattcaagtctttgagggaaatgaagttaagcggttgtaaattcttaaagcaagtacctga |
17792663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 17785732 - 17785924
Alignment:
| Q |
17 |
aagataaagaagttcaatgggatggaaatgcattgaagaatatggaaaacctcaagatactggtaatagagaaaactcgcttttccagaggacctaatca |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| | |||||||| ||| |||||||||| | |||||||||||| |
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| T |
17785732 |
aagataaagaagtacaatgggatggaaatgcattgaagaagatggaaaacctcaaaatattagtaatagaaaaagctcgcttttcgataggacctaatca |
17785831 |
T |
|
| Q |
117 |
tcttccaaaaagtttaagagtgctaaaatggtttgattatcctgaatcgtcattgccggctcattataatccaaagaaacttgtcatacttga |
209 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||| | | ||||||||||||||||||||||||| |
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| T |
17785832 |
tcttccaaaaagtttaagagtgctaaaatggcgtgattatcctgaatcatcactgccggttcactttgatccaaagaaacttgtcatacttga |
17785924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 17819324 - 17819488
Alignment:
| Q |
17 |
aagataaagaagttcaatgggatggaaatgcattgaagaatatggaaaacctcaagatactggtaatagagaaaactcgcttttccagaggacctaatca |
116 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||| || |||| ||| |||||||||||||||||||| |||| |
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| T |
17819324 |
aagataaaaaagtacaatgggatggaaatgcattgaagaagatggaaaacctcaaaatactaatagtagaaaaagctcgcttttccagaggaccttatca |
17819423 |
T |
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| Q |
117 |
tcttccaaaaagtttaagagtgctaaaatggtttgattatcctgaatcgtcattgccggctcatt |
181 |
Q |
| |
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|||||||||||||||| || | ||||||| || ||||||||||||||| ||| | |||| ||||| |
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| T |
17819424 |
tcttccaaaaagtttacgaattctaaaatagtgtgattatcctgaatcatcacttccggttcatt |
17819488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 16693062 - 16693106
Alignment:
| Q |
96 |
cttttccagaggacctaatcatcttccaaaaagtttaagagtgct |
140 |
Q |
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|||||||| |||||| || ||||||||||| |||||||||||||| |
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| T |
16693062 |
cttttccaaaggaccaaaacatcttccaaatagtttaagagtgct |
16693106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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