View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931-Insertion-1 (Length: 1038)

Name: NF2931-Insertion-1
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931-Insertion-1
NF2931-Insertion-1
[»] chr7 (3 HSPs)
chr7 (7-1038)||(43412235-43413267)
chr7 (855-953)||(43412036-43412135)
chr7 (847-916)||(43412218-43412287)


Alignment Details
Target: chr7 (Bit Score: 940; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 940; E-Value: 0
Query Start/End: Original strand, 7 - 1038
Target Start/End: Complemental strand, 43413267 - 43412235
Alignment:
Q  7 acttgtaactttgtaagtaccctattttcttctgctaatgcataaaacaacagtatctataatttttcctcttgtttaactgttttggtacatctgaaga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43413267 acttgtaactttgtaagtaccctattttcttctgctaatgcataaaacaacagtatctataatttttcctcttgtttaactgttttggtacatctgaaga 43413168  T
Q  107 catgtctggtcttgtatattgcttgttatcagatattgtctggttcagcgttgtttcgtttttcaaagaatatgaatcagtctggcttgcttcaattggt 206  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43413167 catgtctggtcttgtatattgcttgttatcagatattgtctgcttcagcgttgtttcgtttttcaaagaatatgaatcagtctggcttgcttcaattggt 43413068  T
Q  207 ctcaagtgattctgatttgagaaagccggtactattttgttataatttacttccttcgcgttaggatctgttcctgtgtgcctgaaggaaccaaaaggaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43413067 ctcaagtgattctgatttgagaaagccggtactattttgttataatttacttccttcgcgttaggatctgttcctgtgtgcctgaaggaaccaaaaggaa 43412968  T
Q  307 ataaaagtgtcaaacaaatatattgtaaactacattttctgatacatacatgccttgtattctcaaacaatcatatgtaacactatatatacaaaaacat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43412967 ataaaagtgtcaaacaaatatattgtaaactacattttctgatacat----gccttgtattttcaaacaatcatatgtaacactatatatacaaaaacat 43412872  T
Q  407 aatttttgtaattgtttgtctaattaaccattcaagaatctcacattgtatagcaatatagtctaagcactggttataaatgggaaacaatcctcacctt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43412871 aatttttgtaattgtttgtctaattaaccattcaagaatctcacattgtatagcaatatagtctaagcactggttataaatgggaaacaatcctcacctt 43412772  T
Q  507 acaaagcagttttgtgaggtggagttagacttacctgaagttttggatttcatagagatcatctgaactttcccgtagcatgttgctgcttggtcctttg 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43412771 acaaagcagttttgtgaggtggagttagacttacctgaagttttggatttcatagagatcatctgaactttcccgtagcatgttgctgcttggtcctttg 43412672  T
Q  607 gcactgacatcattttccacagatggttgaacaagttttgcagaatatggatactctttgttgcctttttctttgcagcttgcctcatcattaacaaagc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43412671 gcactgacatcattttccacagatggttgaacaagttttgcagaatatggatactctttgttgcctttttctttgcagcttgcctcatcattaacaaagc 43412572  T
Q  707 taaaagagaatctgcgtgatcgaaatccgtatttctgaaccgatgaaatagccctttctaatgtttctaaagcctgctttacatttgagctgatatatac 806  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43412571 taaaagagaacctgcgtgaacgaaatccgtatttctgaaccgatgaaatagccctttctaatgtttctaaagcctgttttacatttgagctgatatatac 43412472  T
Q  807 attactctttctcttcaatacacctcgtatattatcatattcaattgaaatgtcatgttctttattcacatccttttcaatttgtaccatatcttcaata 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43412471 attactctttctcttcaatacacctcgtatattatcatattcaattgaaatgtcatgttctttattcgcatccttttcaatttgtaccatatcttcaata 43412372  T
Q  907 tttgcttctacagtctcttcactatttgcgtcgac-atctcacaattcttatggccctttagcac-atagatgtatcaactt-ctcaactgaaatgtcat 1003  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  43412371 tttgcttccacggtctcttcactatttgcgtcgacaatctcacaattcttatggccctttagcacaatagatgtatcaacttcctcaactgaaatgtcat 43412272  T
Q  1004 ttactttc-ttacattc-tttcatttagtacaatctc 1038  Q
    |||||||| |||||||| ||||| || ||||||||||    
T  43412271 ttactttctttacattcttttcaatttgtacaatctc 43412235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 855 - 953
Target Start/End: Complemental strand, 43412135 - 43412036
Alignment:
Q  855 aatgtcatgttctttattcacatccttttcaatttgtaccatatcttcaatatttgcttctacagtctcttcactatttgcgtcgac-atctcacaattc 953  Q
    |||||| ||| |||| || |||||||| ||||||||||| || |||||||||||| |||||||| ||||||| || | ||| ||||| ||||||||||||    
T  43412135 aatgtcgtgtactttcttgacatccttctcaatttgtacaatctcttcaatattttcttctacaatctcttcgctgtctgcatcgacaatctcacaattc 43412036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 847 - 916
Target Start/End: Complemental strand, 43412287 - 43412218
Alignment:
Q  847 tcaattgaaatgtcatgttctttattcacatccttttcaatttgtaccatatcttcaatatttgcttcta 916  Q
    |||| ||||||||||| | |||| || |||| ||||||||||||||| || ||| |||||| ||||||||    
T  43412287 tcaactgaaatgtcatttactttctttacattcttttcaatttgtacaatctctccaatatctgcttcta 43412218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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