View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2931-Insertion-10 (Length: 358)
Name: NF2931-Insertion-10
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931-Insertion-10 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 5159865 - 5160213
Alignment:
| Q |
12 |
ttcctgagtgtttaaggaacttaacaaacctcagagttcttgaacttagccataatctattcagtggaaattttccatccttcactaccaatctcacatc |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||| || |||||||||||| |
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|
| T |
5159865 |
ttcctgagtgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaagtttccatctttcattagcaatctcacatc |
5159964 |
T |
|
| Q |
112 |
tctgggatacttatccttctatggaaattacatgcaaggatcattttcattgaccactttggctaatcacaccaatcttcaagtgctatatatttcatca |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | || ||||||||||||||| |
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|
| T |
5159965 |
actggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatca |
5160064 |
T |
|
| Q |
212 |
caa---agtaatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtccctcattcttcaaaattgcaacctaaacaagg |
308 |
Q |
| |
|
|| | || ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
5160065 |
aaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaagg |
5160164 |
T |
|
| Q |
309 |
acaaagaaagtgtcattcctacttttctttcatatcaatacaatctgat |
357 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
5160165 |
acaaaggaagtgtcattcctacttttctttcttatcaatacaatttgat |
5160213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 5195503 - 5195846
Alignment:
| Q |
8 |
aaacttcctgagtgtttaaggaacttaacaaacctcagagttcttgaacttagccataatctattcagtggaaattttccatccttcactaccaatctca |
107 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| || |||||||| |
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|
| T |
5195503 |
aaacttccagattgtttaagcaacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctca |
5195602 |
T |
|
| Q |
108 |
catctctgggatacttatccttctatggaaattacatgcaaggatcattttcattgaccactttggctaatcacaccaatcttcaagtgctatatatttc |
207 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | || ||||||||||| |
|
|
| T |
5195603 |
catcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttc |
5195702 |
T |
|
| Q |
208 |
atcacaa---agtaatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtccctcattcttcaaaattgcaacctaaac |
304 |
Q |
| |
|
|||| || | || ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| || ||| || |||||||||||||||| |
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|
| T |
5195703 |
atcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaac |
5195802 |
T |
|
| Q |
305 |
aaggacaaagaaagtgtcattcctacttttctttcatatcaata |
348 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5195803 |
aaggacgaaggaagtgtcattcctacttttctttcatatcaata |
5195846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 4842748 - 4842395
Alignment:
| Q |
8 |
aaacttcctgagtgtttaaggaacttaacaaacctcagagttcttgaacttagccataatctattcagtggaaattttccatccttcactaccaatctca |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4842748 |
aaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctgttcggtggaaattttccatccttcactaccaatctca |
4842649 |
T |
|
| Q |
108 |
catctctgggatacttatccttctatggaaattacatgcaaggatcattttcattgaccactttggctaatcacaccaatcttcaagtgctatatatttc |
207 |
Q |
| |
|
|||| || || |||||| |||||| ||||||||||||||||||||||||| | | || ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
4842648 |
catccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttc |
4842549 |
T |
|
| Q |
208 |
atc---acaaagtaatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtccctcattcttcaaaattgcaacctaaac |
304 |
Q |
| |
|
||| | | |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4842548 |
atctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaac |
4842449 |
T |
|
| Q |
305 |
aaggacaaagaaagtgtcattcctacttttctttcatatcaatacaatctgata |
358 |
Q |
| |
|
| | | |||| |||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
4842448 |
atgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
4842395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 5172777 - 5173130
Alignment:
| Q |
8 |
aaacttcctgagtgtttaaggaacttaacaaacctcagagttcttgaacttagccataatctattcagtggaaattttccatccttcactaccaatctca |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
5172777 |
aaacttcctgagtgtttaagtaacttaacaaacctcagaattcttgaccttagccataatctattcagtggaaattttccatccttcattagtaatctca |
5172876 |
T |
|
| Q |
108 |
catctctgggatacttatccttctatggaaattacatgcaaggatcattttcattgaccactttggctaatcacaccaatcttcaagtgctatatatttc |
207 |
Q |
| |
|
|||| || || |||||| |||||| ||||||||||||||||||||||||| | | || ||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
5172877 |
catccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttc |
5172976 |
T |
|
| Q |
208 |
atc---acaaagtaatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtccctcattcttcaaaattgcaacctaaac |
304 |
Q |
| |
|
||| | | || | ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5172977 |
atcgaaaaacagcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaac |
5173076 |
T |
|
| Q |
305 |
aaggacaaagaaagtgtcattcctacttttctttcatatcaatacaatctgata |
358 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
5173077 |
aaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
5173130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 5213670 - 5214009
Alignment:
| Q |
9 |
aacttcctgagtgtttaaggaacttaacaaacctcagagttcttgaacttagccataatctattcagtggaaattttccatccttcactaccaatctcac |
108 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| | ||||||||||||||| ||||| | ||||||||||||||||||||||||| || |||||||| |
|
|
| T |
5213670 |
aacttcccgagtgtttaagcaacttaacaaacctgaatgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcac |
5213769 |
T |
|
| Q |
109 |
atctctgggatacttatccttctatggaaattacatgcaaggatcattttcattgaccactttggctaatcacaccaatcttcaagtgctatatatttca |
208 |
Q |
| |
|
||| |||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
5213770 |
atcactggcatacttatccctctttggaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttca |
5213869 |
T |
|
| Q |
209 |
tcacaaagtaatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtccctcattcttcaaaattgcaacctaaacaagg |
308 |
Q |
| |
|
|||||||| | ||| ||| |||||||||||||||| | ||||||||| || ||||||||||||||| | ||||||||| |||||||||| ||||||||| |
|
|
| T |
5213870 |
tcacaaagcattggtgcaaacattgaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaagg |
5213969 |
T |
|
| Q |
309 |
acaaagaaagtgtcattcctacttttctttcatatcaata |
348 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5213970 |
acaaaggaagtgtcattcctacttttctttcatatcaata |
5214009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 5182109 - 5182459
Alignment:
| Q |
8 |
aaacttcctgagtgtttaaggaacttaacaaacctcagagttcttgaacttagccataatctattcagtggaaattttccatccttcactaccaatctca |
107 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||| || |||||||| |
|
|
| T |
5182109 |
aaacttccagagtgtttaagcaacttaacaaaccttagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctca |
5182208 |
T |
|
| Q |
108 |
catctctgggatacttatccttctatggaaattacatgcaaggatcattttcattgaccactttggctaatcacaccaatcttcaagtgctatatatttc |
207 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
5182209 |
catcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttc |
5182308 |
T |
|
| Q |
208 |
atcacaaagtaatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtccctcattcttcaaaattgcaacctaaacaag |
307 |
Q |
| |
|
| | ||| | ||||| | ||||||||||||||| | |||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
5182309 |
accggaaaacagtggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaag |
5182408 |
T |
|
| Q |
308 |
gacaaagaaagtgtcattcctacttttctttcatatcaatacaatctgata |
358 |
Q |
| |
|
|| |||| | ||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
5182409 |
gagaaaggaggtgtcattcctacttttctttcatatcaatataatttgata |
5182459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 78 - 348
Target Start/End: Complemental strand, 4857151 - 4856882
Alignment:
| Q |
78 |
gaaattttccatccttcactaccaatctcacatctctgggatacttatccttctatggaaattacatgcaaggatcattttcattgaccactttggctaa |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4857151 |
gaaattttccatccttcactaccaatctcacatctcttgcatact-atccatctatggaaattacatgcaaggatcattttcattgaccactttggctaa |
4857053 |
T |
|
| Q |
178 |
tcacaccaatcttcaagtgctatatatttcatcacaaagtaatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtcc |
277 |
Q |
| |
|
|||| | |||||||| |||||||||||| | ||| | ||||| | ||||||||||||||| | |||||||||||| ||||||||||||||| | |
|
|
| T |
4857052 |
tcactcaaatcttcagcatctatatatttcaccggaaaacagtggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaagaca |
4856953 |
T |
|
| Q |
278 |
ctcattcttcaaaattgcaacctaaacaaggacaaagaaagtgtcattcctacttttctttcatatcaata |
348 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4856952 |
ctcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctacttttctttcatatcaata |
4856882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 346
Target Start/End: Original strand, 7142254 - 7142381
Alignment:
| Q |
218 |
aatggagcacacattgaaactgaaaaaataaagtggtttcctaaatttcaattgaagtccctcattcttcaaaattgcaacctaaacaaggacaaagaaa |
317 |
Q |
| |
|
||||||| |||| ||||||||||||| | |||||||||||||| ||||||| | | | || || || |||||||||||| ||||| |||||||| || |
|
|
| T |
7142254 |
aatggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaa |
7142352 |
T |
|
| Q |
318 |
gtgtcattcctacttttctttcatatcaa |
346 |
Q |
| |
|
||||||||||| |||| ||||||||||| |
|
|
| T |
7142353 |
atgtcattcctagttttttttcatatcaa |
7142381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 5202773 - 5202887
Alignment:
| Q |
136 |
aaattacatgcaaggatcattttcattgaccactttggctaatcacaccaatcttcaagtgctatatatttcatcacaaagtaatggagcacacattgaa |
235 |
Q |
| |
|
|||| ||| ||||||| |||||||| | | |||||||||||||||| || ||||| | ||||||||||| ||| |||| | ||||| |||||||||| |
|
|
| T |
5202773 |
aaatcacacgcaaggaccattttcagtaagcactttggctaatcacttcacgcttcaggatctatatatttcctcagaaagcattggagaacacattgaa |
5202872 |
T |
|
| Q |
236 |
actgaaaaaataaag |
250 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
5202873 |
acttaaaaaacaaag |
5202887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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